Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g00280 ATGGAGCAAACCACGCTCGAAGCCATTCAGTTCAACGAGGAAATCCAAGGAATCATGGCTCCGGCGCCGGAAACCGCAAGTTCCTTCACCGCGCTGCTCGAGCTCCCGCCGACGCAGGCCGTCGAGCTCCTCCACTCGCCAGAGCGCGCCGGGAAACCGCCGCGCCATAATCCGAAACCCTATCCGTTGACCTCAGTTGCCTCCGCTTCCGCCGCCAACCTGACCTTCCCGTCCAACGCTGCGCTGATAGAACGCGCCGCTAGGTTTTCCGTCTTCGCCGGAGAGAATTCCAACTCGAACACGAACTCGAACTCCCCGGAGGTGAAGCGCGAGCTGCCGGAGACCGATTCCAACCCGAGTTCGACTCAGGGCGGCGGCTCCGCCTCCGATCCCCCTCTGGAGAACAAGGACGCGAAGGGCTTGAAGAGGAAGGAGCGAGAGAAGAAGGTTAAAGCGTCGTCGAAGAAGAGCAAGAGTGTCGTCGCTGACGAGAGTTCCGGCGACGGCGAGAAGCTTCCGTACGTTCACGTTCGAGTTCGTCGAGGTCAAGCCACTGATAGCCACAGCTTAGCAGAAAGGGCTAGGAGAGAGAAGATAAATGCTCGGATGAAGCTTTTGCAAGAGCTGGTCCCGGGTTGCAACAAGATATCAGGAACAGCATTGGTTCTGGATAAAATCATCAACCATGTGCAATCTCTACAGCATGAAGTGGAGATATTATCAATGAAACTGGCAGCAGTAAACCCAGTAATTGATTTCAACCTTGACAGCTTATTGGCTACCGAAGGAGTGTCTCCAGTGGGCTGTAACTTCCCTCCCACAGTTGCACCAGTTGTGTGGCCAGAAACCCCGCAGAATGGAAACAGACAACAATATCAGCAACCGTGGCAATTCGATGCTTTCCACCAATCCATTTGGGGTAGAGAAGAAGACAACACTAATTTCATGACTCCAGAAAACTCACTCTTGAGTTATGACTCATCGGCAAATTCAGTTGAAGATGGAGCTCTGAAGGCGTACAAAGGTGGTGGCACCATCACTTTTTGCCGAAGAGCTCGAAAGAGTAGTCCTCTTCTGTACCAACTGAACAATCCCAGAGATGGTGAAATGTACTCTGGTTCGTTGCCACACCTAAGACAAACAGCATGGCCATTGCTGAAAGAAGCACACGCCTCTCTCATTGTCTCCAATTCATTGTTGTGCACTGCCACTGCTTCAAAGATCCTTTCTTTGTATGCACAGTTTCGTGACCTTGACAGTGTTCTTGGGGTGTTCAGAACAAGGCCAGAGGATGCACCTCGTACAATGATGTGGAACTTGATCATGAGGTCCCATGTCGATTTGGGTCTGTTCGATTCAGCTCTCTTTTTGTACAAAAAGATGAGGCAAAAGGGTGTTCCCCATGATGGTTTTACTTTGCCGTTAGTGAACCGAGCCTTGTCATCCATGAGGGTTGATGTTGTGTATGGGAAAATGATCCACTGTGTGGCAACTCAAATGGGTTTGGATGGGGATTTGTATTTTTGCAATACCATGATTGATGTTTTAGTGAAATGTGGGTGCGTTGGTTGTGCTCGCCGAGTGTTTGATGAAATGTCACAGAGGGATGTCGTTTCTTGGACTTTGATGATTGCGGGATATGGTTCTGAGAGACTTGTTTGTATGGCCTTTGATTTGTTTAACAAGATGAGGATGGAATTGGAACCAAACTCGGTCACGCTTATTGTGATGTTGCAGGCATGTTGTGCTTCCATAAAATTAAGTGAGGGAACTCAAGTACATGGGTGTGTACTGAAGAGTGGATTGCTAATGGATTGGTCAGTGAAGAACTCGGTTTTGAGAATGTATGGTAGTAAAGGGAGTACAAAAGAAGTGGAACTTTTATTCGGTGAAGTAACCATGGAGGATGTGGTTTCTTGGAATATTTTGATTTCCTTTTACTACTCAGAAGGAGACACAATAAGAGTGGCAGGTTTGCTCAAAGAAATACAGAGCCTAGAAGTGCATTTGTGGAACATTGAAACTTTAACTCTCGTTATATCGGCATTTGCAAAGTCTGGTAGTCTTTTTGAGGGTGAAGGCATGCACTGCTTAGTCATAAAAACTGGGTTTTCTGATGATGTTTTGTTGACATCTCTTCTTGACTTTTATGCCAAGTGTGGGAAATTGGAAACATCAGTTCAACTGTTTAGTGAAATCCGTTCTAAAAGTAACATCACTTGGGGTGCTATGATGTCAGGTTTCATTCAGAATGGCTCTTTTATGGAGGCTATAGTTTTATTCCAACAAATGCAAGCTGAAGATCTTTATATTGTCCCTGAAATTTGGAGAAATCTTCTGGATGCATATGCAAACCTGGGAGCTTTAAAACTGGGCAGAGTAGTGCATGGTTATCTTATAAAGAACTTGTTTAATGGACCTATAAAAAATTCAGCACACCTTGAGACCTCTATTTTAAACATGTACTTACGAGGTGGTAGCATGTCTTCTGCTAAAAAATGTTTTGATATCATGCCTGTCAAAGATGTAGTAGCATGGACAACAATGATTGAGGGACTTGGCTCCCATGGTTTTTGCTTTGACGCTTTGAAGTATTTTAATTTAATGATTGAGCAAAGAGTGCAGCCAAACTCAGTCACCTTTTTGAGTTTACTCTCCGCGTGTAGCCACTCTGGTCTTGTTAGTGAAGGCTGCAATATTTACCATTCTATGAAATGGGGATGTGGAATTGAACCTGCTTTGGATCACCACACTTGCATTGTGGATCTTTTTGGTCGATGCGGGATGCTTGAAGAGGCCTTAGCCATAATATTGAAAATGGTAATTCTACCTGATAGCAGGATGTGGAATGCTCTTCTAGCAGCTTCCAGAGTTTATGGAAATAAAAAATTCGGAGAATATGCAGCACAAAGACTTTTGGAACTAGAACCTGACAATGCTGGATTTTATACTCTATTGAGTAATGTAAAAGCAAGTGTTGGAAGATGGGACGAGGTTGAAGAACTGAGGAGAGTCATGAGTGAAAGGGATCTTAAGAAGAAACCAGGGTGGAGCTGCATTGAGGTAACCGGGTTCATCCACGGATTTGTTTCTGGTGATAAATCACATCCTGAAGCAGAGGAGATTTATGAGGCATTGGGTAGATTAAGTATAGTGACACAGGATTTAGGGTGA 3174 0.4537 MEQTTLEAIQFNEEIQGIMAPAPETASSFTALLELPPTQAVELLHSPERAGKPPRHNPKPYPLTSVASASAANLTFPSNAALIERAARFSVFAGENSNSNTNSNSPEVKRELPETDSNPSSTQGGGSASDPPLENKDAKGLKRKEREKKVKASSKKSKSVVADESSGDGEKLPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDKIINHVQSLQHEVEILSMKLAAVNPVIDFNLDSLLATEGVSPVGCNFPPTVAPVVWPETPQNGNRQQYQQPWQFDAFHQSIWGREEDNTNFMTPENSLLSYDSSANSVEDGALKAYKGGGTITFCRRARKSSPLLYQLNNPRDGEMYSGSLPHLRQTAWPLLKEAHASLIVSNSLLCTATASKILSLYAQFRDLDSVLGVFRTRPEDAPRTMMWNLIMRSHVDLGLFDSALFLYKKMRQKGVPHDGFTLPLVNRALSSMRVDVVYGKMIHCVATQMGLDGDLYFCNTMIDVLVKCGCVGCARRVFDEMSQRDVVSWTLMIAGYGSERLVCMAFDLFNKMRMELEPNSVTLIVMLQACCASIKLSEGTQVHGCVLKSGLLMDWSVKNSVLRMYGSKGSTKEVELLFGEVTMEDVVSWNILISFYYSEGDTIRVAGLLKEIQSLEVHLWNIETLTLVISAFAKSGSLFEGEGMHCLVIKTGFSDDVLLTSLLDFYAKCGKLETSVQLFSEIRSKSNITWGAMMSGFIQNGSFMEAIVLFQQMQAEDLYIVPEIWRNLLDAYANLGALKLGRVVHGYLIKNLFNGPIKNSAHLETSILNMYLRGGSMSSAKKCFDIMPVKDVVAWTTMIEGLGSHGFCFDALKYFNLMIEQRVQPNSVTFLSLLSACSHSGLVSEGCNIYHSMKWGCGIEPALDHHTCIVDLFGRCGMLEEALAIILKMVILPDSRMWNALLAASRVYGNKKFGEYAAQRLLELEPDNAGFYTLLSNVKASVGRWDEVEELRRVMSERDLKKKPGWSCIEVTGFIHGFVSGDKSHPEAEEIYEALGRLSIVTQDLG 1057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g00280 1057 Pfam Helix-loop-helix DNA-binding domain 187 234 IPR011598 GO:0046983
Spst7g00280 1057 Gene3D - 180 251 IPR036638 GO:0046983
Spst7g00280 1057 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 842 876 IPR002885 -
Spst7g00280 1057 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 181 252 IPR036638 GO:0046983
Spst7g00280 1057 NCBIfam pentatricopeptide repeat 739 769 IPR002885 -
Spst7g00280 1057 NCBIfam pentatricopeptide repeat 844 877 IPR002885 -
Spst7g00280 1057 NCBIfam pentatricopeptide repeat 437 467 IPR002885 -
Spst7g00280 1057 NCBIfam pentatricopeptide repeat 509 538 IPR002885 -
Spst7g00280 1057 Gene3D Tetratricopeptide repeat domain 812 1024 IPR011990 GO:0005515
Spst7g00280 1057 MobiDBLite consensus disorder prediction 94 108 - -
Spst7g00280 1057 Pfam PPR repeat family 535 582 IPR002885 -
Spst7g00280 1057 Pfam PPR repeat family 841 889 IPR002885 -
Spst7g00280 1057 Gene3D Tetratricopeptide repeat domain 382 488 IPR011990 GO:0005515
Spst7g00280 1057 Gene3D Tetratricopeptide repeat domain 591 705 IPR011990 GO:0005515
Spst7g00280 1057 Gene3D Tetratricopeptide repeat domain 489 590 IPR011990 GO:0005515
Spst7g00280 1057 FunFam Pentatricopeptide repeat-containing protein, mitochondrial 815 1038 - -
Spst7g00280 1057 Gene3D Tetratricopeptide repeat domain 706 811 IPR011990 GO:0005515
Spst7g00280 1057 MobiDBLite consensus disorder prediction 115 129 - -
Spst7g00280 1057 FunFam transcription factor bHLH48-like isoform X1 180 252 - -
Spst7g00280 1057 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 183 233 IPR011598 GO:0046983
Spst7g00280 1057 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 505 539 IPR002885 -
Spst7g00280 1057 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 737 771 IPR002885 -
Spst7g00280 1057 Pfam PPR repeat 739 767 IPR002885 -
Spst7g00280 1057 Pfam PPR repeat 918 941 IPR002885 -
Spst7g00280 1057 Pfam PPR repeat 437 466 IPR002885 -
Spst7g00280 1057 Pfam PPR repeat 710 736 IPR002885 -
Spst7g00280 1057 Pfam PPR repeat 638 666 IPR002885 -
Spst7g00280 1057 Pfam E+ motif 1026 1046 IPR046849 -
Spst7g00280 1057 SMART finulus 189 239 IPR011598 GO:0046983
Spst7g00280 1057 FunFam Pentatricopeptide repeat-containing protein 436 590 - -
Spst7g00280 1057 CDD bHLH_AtBPE_like 173 258 - -
Spst7g00280 1057 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 779 1050 IPR046960 GO:0003723|GO:0009451
Spst7g00280 1057 MobiDBLite consensus disorder prediction 43 64 - -
Spst7g00280 1057 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 434 468 IPR002885 -
Spst7g00280 1057 MobiDBLite consensus disorder prediction 152 168 - -
Spst7g00280 1057 MobiDBLite consensus disorder prediction 94 168 - -
Spst7g00280 1057 Pfam E motif 959 1021 IPR046848 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g00280 Spst-Chr7 2166243 2178211 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g00280 365 1049 Glycoside Hydrolase AT3G49170 31.064 4.90e-89 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst7g00280 PPR_2 2.2e-08 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g00280 - - vra:106770066 1093.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst7g00280 7 2166243 2178211 Spst7g00280 7 2166243 2178211 ECH
Spst1g03342 1 42042451 42050573 Spst7g00280 7 2166243 2178211 PCT