Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g00278 ATGGATTCCCATGCCCATCATCATCAGGGTTACCAACTGCACCATCAGAACCAACCCTCTTCTGGGTTACTTCGTTTTCGCTCTGCACCGAGTTCGCTCCTTTCAAATCTCACACCTTTCGTGAGTTACGGTGGTGACACTGTTGCTTCAAGTAGCTTCAAGGAGTTGGAAGAAAACAACAACAAGGGTTGTTCTAAGGATTTGAGTTGTATGAATTCGCATAAGGGTTATGGTGGGGGGTTGCCACCTCACTATCCGAGACACGGTTCTTCTTCTGCTACTTCGAGTTCTGCTATGGAAGGGTCTTATGGGTTGGTGGATTCAATGGGAATGAATCATGAAGCTCCAAATAAGGGGTTTGGGTCAGGTCTTCACAGACAGAGTAGCTCTCCTGCTGGCCTTTTCTCCAACAACAATATTTCCTTTCAAAATGGGTTTGCCACCATAAAAGGTGTTGGAAACTATGGTGGAGTGAATTGCAATAGTAGTGAACTTAGTCCATGTATTAGCAGATTGAAGAATCAGATTAGCTTCTCACCTAGAAATGCTTCTTCCCTGGGAATGTTGTCTCAGATCTCCGAAATAGGGAGTGAAGACGTCGAGGCAACTAGCCCTGATGATGATACGAGTCATGGAGGTAATGATACTCAACATTTTGGCCCTGAATTCCCCTATGGTTCTTGGAACGAGACTCCACAACTCTCAGAAAATCTCAGCGGCTTGAAAAGAGGGAGAAGTGGCAATGAAAAGATATTTTCTGATGTTCAGAATGGAGAGCTAGGAAACCAAGTTAACATATTATCACATCACTTGAGTTTACCAAAAACTTCAGCAGAGATGATTACCATGGAGAAGTTGCTTCAGTTCCCTGATTCTGTTCCTTGTAAAATCAGAGCAAAGCGAGGGTGTGCTACTCATCCTCGAAGCATTGCTGAAAGGGTTAGAAGAACTCGGATCAGTGAAAGAATGAGAAAATTGCAAGAGCTTGTCCCAAACATGGACAAGCAAACCAACACAGCAGACATGTTGGACTTGGCTGTTGAATACATTAAAGATCTTCAGAAACAATTTAAGACTCTTAGTGATAAACGGGCAAACTGCAAGTGTTCAACCATGCAAAAGGAAGATACATAA 1134 0.4321 MDSHAHHHQGYQLHHQNQPSSGLLRFRSAPSSLLSNLTPFVSYGGDTVASSSFKELEENNNKGCSKDLSCMNSHKGYGGGLPPHYPRHGSSSATSSSAMEGSYGLVDSMGMNHEAPNKGFGSGLHRQSSSPAGLFSNNNISFQNGFATIKGVGNYGGVNCNSSELSPCISRLKNQISFSPRNASSLGMLSQISEIGSEDVEATSPDDDTSHGGNDTQHFGPEFPYGSWNETPQLSENLSGLKRGRSGNEKIFSDVQNGELGNQVNILSHHLSLPKTSAEMITMEKLLQFPDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVEYIKDLQKQFKTLSDKRANCKCSTMQKEDT 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g00278 377 SMART finulus 309 359 IPR011598 GO:0046983
Spst7g00278 377 Pfam Helix-loop-helix DNA-binding domain 308 354 IPR011598 GO:0046983
Spst7g00278 377 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 306 368 IPR036638 GO:0046983
Spst7g00278 377 MobiDBLite consensus disorder prediction 198 230 - -
Spst7g00278 377 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 303 353 IPR011598 GO:0046983
Spst7g00278 377 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 27 373 - -
Spst7g00278 377 Gene3D - 304 376 IPR036638 GO:0046983
Spst7g00278 377 FunFam Transcription factor bHLH130 family 304 373 - -
Spst7g00278 377 CDD bHLH_AtbHLH_like 308 361 IPR045239 -
Spst7g00278 377 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g00278 Spst-Chr7 2134637 2137260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g00278 1 359 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 46.094 9.69e-87 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst7g00278 HLH 3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g00278 - - gmx:100819605 646.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst7g00278 7 2134637 2137260 Spst7g00278 7 2134637 2137260 ECH
Spst7g00278 7 2134637 2137260 Spst10g01727 10 17685845 17692100 ECH
Spst1g03338 1 41998832 42001273 Spst7g00278 7 2134637 2137260 PCT