Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g00272 ATGGGGTTCTCTGTAGCTATTGAGTTAGAAGCACAACAACAAGAGCAAGAGACTAAGTTTTTCAGCTCCTCTCTGAATATCATGGCTTCTTCAAGTGTTAAGAGCAACAACTCAACAACTCAACTTGAACCACTCCCCCCACATCTTCATCATCAACAACCACCACATCATTTTCATCATCATCAAATACCAGACCAACAAATCTCGTTTGGGATGATGCCATCACCCTCTATTCCCGCAAATTACTTAAGCAAAGATCCTGGAGCTTATGATTTGGGAGAATTGGATCAAGCTTTTTTTTTGTATCTTGATGGTCAGACAGACCCTTCTAGTATTCAAGACCAAAGACAGAACTCATCATCAGGAATGAGGCCACCACCAACTCTCAACATTTTCCCATCTCAGCCTATGCACGCAGTGCCACCATCCAATTCCAAGGTTAGCATGGAATTACCCTCCACACAGACCAGTGGCTCCAAGAGACCACCAGAGTCATCCATGGCCAAGCCCATACCTCACACTGAAGCCCCCTCTGCACCTGAACCACCCAAAGCTGTAAAGCGAGAGGGCAATCGCAAGGGAACACCGTCAAGTTCTGAGCAAGAAGCACCCAAAACACCAGATCCTAAGACACTGAGAAGACTTGCTCAGAATAGAGAAGCAGCAAGGAAAAGCAGGCTCAGGAAAAAGGCATACGTTCAGCAGCTAGAGTCAAGTAGGATTAAGCTTAATCAGCTAGAACAAGAGTTACAGCGTGCAAGATCTCAAGGCATCTTAATGGGTGGAAATGCCCTTATGGGAGGTGACCAAGGCTTTCCTATGGCTATGGGTGGCATTAGCTCAGAGGCTGCAATGTTTGACGTGGAATATGCGAGGTGGTTAGAGGAGCACCAGCGCATAGTGTTGGAGCTGAGAGGTGCAGTGCAAGAACACCTCCATGAAAACGAGCTTCGGCTATATGTGGATAATTGTTTGGCTCACTACGACCAAGTAATCAACCTCAAGACCATGGTGGCCAAAACAGACGTATTCCACCTTGTTTTTGGCATGTGGAAGACCCCAGCTGAACGTTGCTTCATGTGGATTGGTGGCTTCAGACCCTCTGAACTCATCAAGATTATTCTGGGTCAAATTGAGCCTCTTACGGAGCAACAAATACTTGGGATATGTGGGTTGCAACAGTCTACACAAGAGGCTGAAGAGGCTCTTTCTCAAGGGCTTGATGCCCTAAACCAATCTCTCTCAGACACTTTAACATCAGACTCTTTGTGGTGTCCTCCAAATATGACTAACTACATGGGACAGATGGCTGTGGCAATCAACAAACTCTCCACCCTTGAAAGTTTTGTGAGACAGGCTGATAATCTGAGGCACCAAACCATTCATCGTCTGCACCAACTTCTGACCACACGCCAAGCCGCGAGGTGTTTGGTGGCCATTTCTGAGTACTTCCATCGTCTCCGAGCCCTGAGTTCTCTCTGGTTCGCACGCCCTCGCCAAGACTAG 1506 0.4714 MGFSVAIELEAQQQEQETKFFSSSLNIMASSSVKSNNSTTQLEPLPPHLHHQQPPHHFHHHQIPDQQISFGMMPSPSIPANYLSKDPGAYDLGELDQAFFLYLDGQTDPSSIQDQRQNSSSGMRPPPTLNIFPSQPMHAVPPSNSKVSMELPSTQTSGSKRPPESSMAKPIPHTEAPSAPEPPKAVKREGNRKGTPSSSEQEAPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLNQLEQELQRARSQGILMGGNALMGGDQGFPMAMGGISSEAAMFDVEYARWLEEHQRIVLELRGAVQEHLHENELRLYVDNCLAHYDQVINLKTMVAKTDVFHLVFGMWKTPAERCFMWIGGFRPSELIKIILGQIEPLTEQQILGICGLQQSTQEAEEALSQGLDALNQSLSDTLTSDSLWCPPNMTNYMGQMAVAINKLSTLESFVRQADNLRHQTIHRLHQLLTTRQAARCLVAISEYFHRLRALSSLWFARPRQD 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g00272 501 SMART brlzneu 206 259 IPR004827 GO:0003700|GO:0006355
Spst7g00272 501 Coils Coil 229 256 - -
Spst7g00272 501 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 213 228 IPR004827 GO:0003700|GO:0006355
Spst7g00272 501 MobiDBLite consensus disorder prediction 107 213 - -
Spst7g00272 501 SUPERFAMILY Leucine zipper domain 210 252 IPR046347 GO:0003700|GO:0006355
Spst7g00272 501 Pfam Seed dormancy control 303 374 IPR025422 GO:0006351|GO:0043565
Spst7g00272 501 Gene3D - 209 259 - -
Spst7g00272 501 PANTHER TRANSCRIPTION FACTOR TGA9 119 500 - -
Spst7g00272 501 MobiDBLite consensus disorder prediction 137 163 - -
Spst7g00272 501 ProSiteProfiles DOG1 domain profile. 283 497 IPR025422 GO:0006351|GO:0043565
Spst7g00272 501 MobiDBLite consensus disorder prediction 107 128 - -
Spst7g00272 501 CDD bZIP_HBP1b-like 210 262 - -
Spst7g00272 501 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 208 252 IPR004827 GO:0003700|GO:0006355
Spst7g00272 501 FunFam BZIP family transcription factor 209 258 - -
Spst7g00272 501 Pfam bZIP transcription factor 210 249 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g00272 Spst-Chr7 2082106 2088687 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g00272 80 501 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT5G06839 64.706 0.0 559
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Spst7g00272 DOG1 2.3e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g00272 K14431 - gmx:100800059 835.099
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03328 1 41918153 41921899 Spst7g00272 7 2082106 2088687 PCT