LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst7g00263	ATGAGTTCTGGTTCAGTCACCAAAGCACCACCCTCCTCCTCCTCATCACCCAACTCTTCCGCTGAGTCGCTTGATGGCTTGAAGTTTGGCCAGAAAATCTACTTCGAGGATGTGAGTGTTGCAGCTGCAGCAACAACTCAAGGGGCCAAAGCAAGTGCTGGGGTTTCTTCTTCTTCTTCAAAGAAGGGAAGGGTTGGTTCAGTGCAACCGCCTCAGCCTCCTAGGTGTCAGGTTGCGGGCTGCAAAGTAGATCTGACTGGAGCTAAGGCTTACTATTCTAGGCACAAAGTATGTGCCATGCACTCCAAGTCCCCAACTGTCGTTGTGGCTGGTCTGGAACAAAGGTTTTGCCAACAGTGTAGCAGAAAGGCTCATGTTTGTGGATTTGTTATATCTGTTGTTACTGATTCTGCCGTAGAAAACAATGGTGCTCTTGTGAGTCTCTGTTGCTTCTTCTCTTCTCTTTTATTGTTTCAAGAAGTGCTCGCAACGAAATTCGAGTTATCAAGGGCAGGAAAAAGGTTCCATCTGCTTGCTGAATTTGATCAAGGAAAGCGAAGCTGCCGTAGGCGACTTGCTGGCCATAATGAGCGCCGCCGAAAGCCCCCACCCAGCTCCATATTAGCCTCTCGCTATAGCAGGCTTTCTTCCCCGATTTTTGATAGCAATGGTAGAGCTGGTGGCATTCTCATGGAATTTGCTTCATATCCAAAGCTTACGTGGAGAAACACCTTGCCAACTCCAAGATCAGCCGAGCTGCTACCCGGAAACCATGCTGCAACACTCACCTGGCAGGCCAGCTCAGACACACCATCTGAATTTTTCCTGCAGGGATCAGGGAGTGGTGGAACAAGCTTCCTTGGTTCTAAACATCCTTTAGTGGAAAGCTACAGTGGAGTCACTGACTCAAACTGTGCTCTCTCTCTTCTGTCAAATCAAACATGGGGTTCCAGAACCATACGACCAAGTGTTGAACTGAACAACAACATGTTGAATTTCAATGGGACATCGATGACACAATTCGCGGCTTCCTCACAAGTTGCAGCCATGCATCAACTTTCAAATGCCACTTCATGGTACCTAAAGGGCTTTGACTCGCCGGAGGGTGTCCCTGATCTCGGTCTAGGCCAAATTTCGCCTTCTCTTCATAGCCATCTTCATGGTGAGCTTGATGTGTCACAGCCGGGTAGGAGGCATTACATGGATCTTGGTGAGTCCAGGGCCTCAGCAAGTTATGAGCAAGACATGGATCATTTGAATGTGGCATGA	1269	0.4854	MSSGSVTKAPPSSSSSPNSSAESLDGLKFGQKIYFEDVSVAAAATTQGAKASAGVSSSSSKKGRVGSVQPPQPPRCQVAGCKVDLTGAKAYYSRHKVCAMHSKSPTVVVAGLEQRFCQQCSRKAHVCGFVISVVTDSAVENNGALVSLCCFFSSLLLFQEVLATKFELSRAGKRFHLLAEFDQGKRSCRRRLAGHNERRRKPPPSSILASRYSRLSSPIFDSNGRAGGILMEFASYPKLTWRNTLPTPRSAELLPGNHAATLTWQASSDTPSEFFLQGSGSGGTSFLGSKHPLVESYSGVTDSNCALSLLSNQTWGSRTIRPSVELNNNMLNFNGTSMTQFAASSQVAAMHQLSNATSWYLKGFDSPEGVPDLGLGQISPSLHSHLHGELDVSQPGRRHYMDLGESRASASYEQDMDHLNVA	422

Showing 1 to 1 of 1 entries

Previous1Next

Annotation information

Show entries

Search:

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Spst7g00263	422	ProSiteProfiles	Zinc finger SBP-type profile.	73	202	IPR004333	GO:0003677
Spst7g00263	422	MobiDBLite	consensus disorder prediction	50	73	-	-
Spst7g00263	422	Gene3D	-	66	189	IPR036893	GO:0003677\|GO:0005634
Spst7g00263	422	PANTHER	SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4	12	401	IPR044817	GO:0003677
Spst7g00263	422	SUPERFAMILY	SBT domain	173	207	IPR036893	GO:0003677\|GO:0005634
Spst7g00263	422	MobiDBLite	consensus disorder prediction	1	23	-	-
Spst7g00263	422	MobiDBLite	consensus disorder prediction	50	66	-	-
Spst7g00263	422	SUPERFAMILY	SBT domain	74	123	IPR036893	GO:0003677\|GO:0005634
Spst7g00263	422	Pfam	SBP domain	76	125	IPR004333	GO:0003677
Spst7g00263	422	Pfam	SBP domain	173	201	IPR004333	GO:0003677

Showing 1 to 10 of 10 entries

Previous1Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst7g00263	Spst-Chr7	2025282	2029476	Wgd

Showing 1 to 1 of 1 entries

Previous1Next

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst7g00263	27	312	SBP-box Gene Family	AT2G42200	40.411	1.19e-50	173

Showing 1 to 1 of 1 entries

Previous1Next

Transcription factors information

Show entries

Search:

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	SBP	Spst7g00263		SBP	5.1e-17	No_clan

Showing 1 to 1 of 1 entries

Previous1Next

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst7g00263	-		-	gmx:100789301	510.375

Showing 1 to 1 of 1 entries

Previous1Next

Event-related genes

Show entries

Search:

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Spst7g00263	7	2025282	2029476	Spst7g00263	7	2025282	2029476	ECH
	Spst1g03319	1	41767841	41771803	Spst7g00263	7	2025282	2029476	PCT

Showing 1 to 2 of 2 entries

Previous1Next