Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g00263 ATGAGTTCTGGTTCAGTCACCAAAGCACCACCCTCCTCCTCCTCATCACCCAACTCTTCCGCTGAGTCGCTTGATGGCTTGAAGTTTGGCCAGAAAATCTACTTCGAGGATGTGAGTGTTGCAGCTGCAGCAACAACTCAAGGGGCCAAAGCAAGTGCTGGGGTTTCTTCTTCTTCTTCAAAGAAGGGAAGGGTTGGTTCAGTGCAACCGCCTCAGCCTCCTAGGTGTCAGGTTGCGGGCTGCAAAGTAGATCTGACTGGAGCTAAGGCTTACTATTCTAGGCACAAAGTATGTGCCATGCACTCCAAGTCCCCAACTGTCGTTGTGGCTGGTCTGGAACAAAGGTTTTGCCAACAGTGTAGCAGAAAGGCTCATGTTTGTGGATTTGTTATATCTGTTGTTACTGATTCTGCCGTAGAAAACAATGGTGCTCTTGTGAGTCTCTGTTGCTTCTTCTCTTCTCTTTTATTGTTTCAAGAAGTGCTCGCAACGAAATTCGAGTTATCAAGGGCAGGAAAAAGGTTCCATCTGCTTGCTGAATTTGATCAAGGAAAGCGAAGCTGCCGTAGGCGACTTGCTGGCCATAATGAGCGCCGCCGAAAGCCCCCACCCAGCTCCATATTAGCCTCTCGCTATAGCAGGCTTTCTTCCCCGATTTTTGATAGCAATGGTAGAGCTGGTGGCATTCTCATGGAATTTGCTTCATATCCAAAGCTTACGTGGAGAAACACCTTGCCAACTCCAAGATCAGCCGAGCTGCTACCCGGAAACCATGCTGCAACACTCACCTGGCAGGCCAGCTCAGACACACCATCTGAATTTTTCCTGCAGGGATCAGGGAGTGGTGGAACAAGCTTCCTTGGTTCTAAACATCCTTTAGTGGAAAGCTACAGTGGAGTCACTGACTCAAACTGTGCTCTCTCTCTTCTGTCAAATCAAACATGGGGTTCCAGAACCATACGACCAAGTGTTGAACTGAACAACAACATGTTGAATTTCAATGGGACATCGATGACACAATTCGCGGCTTCCTCACAAGTTGCAGCCATGCATCAACTTTCAAATGCCACTTCATGGTACCTAAAGGGCTTTGACTCGCCGGAGGGTGTCCCTGATCTCGGTCTAGGCCAAATTTCGCCTTCTCTTCATAGCCATCTTCATGGTGAGCTTGATGTGTCACAGCCGGGTAGGAGGCATTACATGGATCTTGGTGAGTCCAGGGCCTCAGCAAGTTATGAGCAAGACATGGATCATTTGAATGTGGCATGA 1269 0.4854 MSSGSVTKAPPSSSSSPNSSAESLDGLKFGQKIYFEDVSVAAAATTQGAKASAGVSSSSSKKGRVGSVQPPQPPRCQVAGCKVDLTGAKAYYSRHKVCAMHSKSPTVVVAGLEQRFCQQCSRKAHVCGFVISVVTDSAVENNGALVSLCCFFSSLLLFQEVLATKFELSRAGKRFHLLAEFDQGKRSCRRRLAGHNERRRKPPPSSILASRYSRLSSPIFDSNGRAGGILMEFASYPKLTWRNTLPTPRSAELLPGNHAATLTWQASSDTPSEFFLQGSGSGGTSFLGSKHPLVESYSGVTDSNCALSLLSNQTWGSRTIRPSVELNNNMLNFNGTSMTQFAASSQVAAMHQLSNATSWYLKGFDSPEGVPDLGLGQISPSLHSHLHGELDVSQPGRRHYMDLGESRASASYEQDMDHLNVA 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g00263 422 ProSiteProfiles Zinc finger SBP-type profile. 73 202 IPR004333 GO:0003677
Spst7g00263 422 MobiDBLite consensus disorder prediction 50 73 - -
Spst7g00263 422 Gene3D - 66 189 IPR036893 GO:0003677|GO:0005634
Spst7g00263 422 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 12 401 IPR044817 GO:0003677
Spst7g00263 422 SUPERFAMILY SBT domain 173 207 IPR036893 GO:0003677|GO:0005634
Spst7g00263 422 MobiDBLite consensus disorder prediction 1 23 - -
Spst7g00263 422 MobiDBLite consensus disorder prediction 50 66 - -
Spst7g00263 422 SUPERFAMILY SBT domain 74 123 IPR036893 GO:0003677|GO:0005634
Spst7g00263 422 Pfam SBP domain 76 125 IPR004333 GO:0003677
Spst7g00263 422 Pfam SBP domain 173 201 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g00263 Spst-Chr7 2025282 2029476 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g00263 27 312 SBP-box Gene Family AT2G42200 40.411 1.19e-50 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Spst7g00263 SBP 5.1e-17 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst7g00263 7 2025282 2029476 Spst7g00263 7 2025282 2029476 ECH
Spst1g03319 1 41767841 41771803 Spst7g00263 7 2025282 2029476 PCT