Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g00255 ATGGCCTCCAAAGGTCCCAGGTCTAAGATTGATCATGAGAGCAGAGCCAAACGGCAAAAGGCTCTTGAAGCTCCAAGGGAGCCTAGGCGACCCAAAACTCATTGGGACCATGTCTTAGAAGAAATGGTGTGGTTATCAAAGGATTTTGAATCAGAGAGGAAATGGAAATTAGCCCAGGCAAAGAAAGTAGCTTTAAGAGCTAGCAAAGGCATGATAGATCAGGCTACAAGAGGTGAAAAGAAGATGAAGGAAGAAGAACAGCGGTTAAGAAAGGTTGCACTAAATATTTCTAAGGATGTTAAGAAATTCTGGACTAAAATAGAAAAGCTGGTTCTTTACAAACATCAAATGGAACTTGATGAGAAGAAGAAAAAGGCACTTGACAAACAGCTTGAGTTTTTATTAGGGCAAACTGAGAGGTACTCAACAATGCTGGCTGAAAATCTTGTGGATGGTCCTCATAAATCAGGAGAGAATAATTCTGTAGAGCATCACATAAGTATTCAACGCAAAGAAGTACATGGAGATGTTATTAATGAACCTAAGGAAGCTGATGTTGTGGAATATCATTCAGATGCAGCTGACAATGATGACGAATATGATGTACAATCTGATGATGAATCGGAGGATGATGAGCAAACAATTGAGCAAGATGAGGCGCTTATTACTAAAGAAGAGAGACAAGAGGAATTGGAAGCGTTGCATGATGAAATGGATCTTCCGATTGAGGAGTTACTCAAACGTTATGCTGGGGAGAAAGGAGAATCGGTGATGAAAGAAGATGTTGAGATGGTAGTTATAAGAGCTGGTGATGGTAAGAAAGGATTAGCATCAGAAAACGGTGATGATCATTTATCTGTTAGCAAAACTGACACAAACAACTCCAGCATGGTCTCTGGTCGACGTTGTGAGGAAAGTAATGGTGATGTTGCTACACCGGCAAACAATCTATCTCAATGTGAGGATGGTCAATCTGAAAATCTGAAAGAGGTTCCGAGTGAGACAGCCAATGAAGATTTTGCATATGATTTTACTGATGAAGAGCACGCCACAGCAGGAAGCAGAGCTGAGCAGTCCTTTACTGCTGAAGATGGTGACTTCTTGCTTGGCACAGAAGATAAGGTGGGGTTGGTAGTTTATGTTTTCTACATGTACTCTGCTTTCCTAATGGCGGGTGGACTTCAACATGTTAATTGTGACATTGACATAATGACTGAAACTTTTAAGGGTATGCCTTCTAATTGTTGTGGACCTCAGTACCTCAGCAAGGTCTCTGGTTGGGCTAGGAATCAAGTCCTATTCCCAATGGTGTCAGTCAGTGCAAATGCCCAGCTTAGCTTTGTTGTATTGTTCAGCCACATGATAACATGGGCAACCATTAAGTATGATTTTTTACAGTTGAATGCAGACACTGGCGTGGCTAGATCTTATGGAGGGCTTGATGATGAAACAACCTTATCTGATGAGGAAAAACTGGAAAGAGTTGATGCAATTGATCCCAAGGATGAGATTGCATTATTACAAAAAGAGAGTGAGATGCCTGTTGAGGAACTGCTTGCAAGGTATAAAAGGGACCCAAGTGACAATGAAGATGGGGAATACGAATCTGATTATGCTTCTGCTTTATCAGAAGACCATTTGGATTCTCCTGTCTATGAAGATGCTGGGCAAAAGGATCCTTCCGTTCCTATGGATGAAGATATCAATTCTTGTGAGCACCTGGCAACTGTACAGTCCCAGGCAGAAGAACATTGGGAATCGCCTCATGAAAATTTGGATCAAAGAGAAAGTGAGCATATAATTGCTGATGCAGCTGCTGCTGCAAGATCAGCACAACCTACTGGAAACACCTTCTCCACAACTAATGTGCGTACCAAATTCCCTTTTCTACTCAAGTACTCTCTTCGTGAGTATCAACATATTGGATTGGATTGGCTTGTCACGATGTATGAAAAAAGACTGAATGGAATTTTGGCAGATGAAATGGGTCTTGGGAAAACAATTATGACAATATCTTTGCTTGCACATCTTGCTTGTGAAAAAGGGATTTGGGGTCCACATTTAATTGTGGTACCAACTAGTGTAATGCTTAATTGGGAGACTGAATTTCTGAAATGGTGTCCTGCTTTTAAAATTTTGACTTATTTTGGAAGTGCAAAGGAGCGAAAACTTAAAAGGCAAGGATGGTTAAAACCAAACTCATTTCATGTATGCATAACAACTTATAGATTAGTTATCCAGGACTCCAAAGTTTTCAAACGCAAAAAATGGAAATACTTGATTTTGGACGAAGCTCATCTCATTAAAAACTGGAAGTCACAAAGATGGCAGACACTCTTGAATTTCAATTCAAAACGACGGATTCTCTTGACTGGTACACCACTACAGAATGATCTCATGGAACTGTGGTCTCTCATGCATTTCTTAATGCCCCATGTTTTCCAGTCGCACCAAGAGTTTAAGGATTGGTTTAGTAATCCTATATCTGGGATGGTAGAGGGAGAAGAAAAAATTAATAAGGAGGTTGTTGATCGCCTGCACAATGTCCTTCGTCCCTTTTTACTCCGTCGACTAAAGCGAGATGTGGAAAAGCAACTTCCAATGAAACATGAACATGTCATATATTGTAGACTATCAAAGAGGCAGCGTAATTTGTATGAAGATTTCATTGCTAGCTCAGAGACTCAAGCAACTCTTGCGAGTGCCAACTTTTTTGGGATGATTAGTATTATCATGCAACTTCGTAAAGTTTGCAACCATCCTGACCTATTTGAGGGTCGACCTATTGTCAGTTCTTTTGATATGTGTGGTATTGATATTCAGTTAAGTTCTTCTGTTTGCTCTATGCTTTTGTCTACTCCCTTTTCAATTGTGGACCTAAGAGGTTTGGGTCTTTTATTCACTGATCTTGACTACCGCATGGCTGCTTGGGAAAGTGATGAAGTACAAGCTATTGAGACCCCTGCAACTTCAATCATGGAACGAACTGATTTAGCTGAGCTAGAAGTAATTAGGCCACTGAAATGTCAAAAAAACTTGCAAGGAACAAACATTTTTGAAGAGATCCAAAGGGCAATCTGGGAAGAGAGGCTAAAGCAGGCAAAGGAACGTGCAGCAGCTGTTGCATGGTGGAACTCCTTGAGATGTAGGAAAAGACCTATGTACTCAACAACTCTGAGGGATCTTGTTACCTTAAGCCATCCTGTATATGATATTCATCAGGTGAAAGCAAACCCTGCTTCGTACATGTACTCATCAAAGCTAGCTGACATTGTTCTCTCCCCCATTGAACGATTTCAAAAGATGACTGATGTGGTTGAAAGCTTCATGTTTGCAATTCCAGCTGCACGGGCACCCTCTCCTGTTTGCTGGTGCAGTACAAGCGAGGCAAATGTGTTTCTGCAGCCATCTTACAAGCAGAAATGCTCTGAAGTTTTGTTACCGCTACTGTCACCAATCCGACCTGCAATTGTTCGCCGGCAAGTATATTTCCCTGATAGGCGTCTTATACAATTTGACTGTGGGAAACTTCAGGAACTTGCAAATTTGTTGAGGAAATTAAAATCAGAAGGTCACCGAGCTCTGATATTCACCCAGATGACAAAGATGCTTGACATATTAGAAGCATTCATTAATTTGTATGGTTATACATACATGCGCTTAGATGGATCAACCCAACCAGAGGAGAGACAGACCTTAATGCAGCGCTTTAACACAAACCCCAAATATTTTCTTTTCATCTTGTCAACCCGAAGTGGGGGTGTTGGTATCAATCTAGTTGGAGCTGACACAGTTATTTTTTATGATAGTGACTGGAATCCTGCTATGGATCAACAGGCACAAGATCGATGCCACAGAATTGGTCAGACACGCGAAGTTCATATTTATAGATTGATTAGTGAAAGCACCATTGAGGAGAATATTTTGAAGAAAGCAAATCAGAAGCGTGCACTTGATAATCTAGTTATACAAAGTGGGGGTTATAATACTGAGTTCTTCAAGAAGCTCGATCCTATGGAGCTATTTTCAGGTCATAGAACACTTTCAATAAAAAATATGCCAAAGGAGAAAACCCAGAACAATGGGGAGGTTTCTGTAACTAATGCAGATGTAGAGGCTGCATTGAAATGTGTAGAAGATGAGGCAGATTACATGGCTTTGAAAAAAGTTGAACTAGAAGAGGCTGTGGACAACCAGGAGTTTACAGAAGAAGCCATTGGGAGACTTGAAGAGGATGAATATGTAAATGAAGACGATGAGCCTGCAGAATTAGGCGAATCTGTTTCGAACTTAAATAAAGAGAATGCATTAATGTTAAATGGAAGTGATCATAAGGAAGATAGACCACCACACACTGTTGCTGTCAAAGAAGATGATGCTGACATGCTGGCTGATGTCAAACAGATGGCTGCAGCTGCAGCTGCAGCTGGACAAGCTATCTCAGCATTTGAAAATGAGCTTCGCCCTATTGATAGATATGCCATTCGCTTTCTGGAACTTTGGGATCCAATTATAGATAAAACAGCCTTGGAATCTGAAGTCAGGATTGAGGACACAGAATGGGAGTTGGATCGCATTGAAAAATACAAGGAGGAGATGGAAGCTGAAATCGATGAAGATGAGGAACCTCTTGTATATGAAAGCTGGGATGCTGATTTTGCAACAATGGCGTATCGACAGCAAGTAGAGGCCTTAGCTCAACATCAGTTGATGGAGGAACTTGAATATGAAGCTAGACAGAAAGAAGCTGAGGAAGAAGCTTGTGATTCTAAAAAGACAATACCAGGGGATTTGAAGCCCAAATCTAAAAAGAAACCTAAGAAGGCGAAATTCAAATCTCTAAAGAAAGGATCTTTAAATTCTGGCTTGAAACCTGTGAAAGAAGAGTCACAAGCAGAGCCAATGAACATAGATGACGAGGATGTCAATGGTCTAGATTTTGTATCTCCAAATTCTGCCATGCAGAAAAAACGGAAGAAATCTAAATTAACAACTGATGGTGAAGAAGACAAGAGACATAAGAAGTCCAAAAAGTTCAAGAGGGATCCTCCTGACTTTTATTCGTCTGATTTTGAATCCAACTCTTTAGTTTTGCATTATGAACATGCAGAATTAAAAACCTGTGAAAGTCTGGTTGATTTGGAACAAAGAACATCAGGCAGGAGTAAGATGGGAGGAAAAATATCCATCACTCCTATGCCTGTAAAACGGATTTGGACGATAAAGCCAGAAAAATTAAAAAAGGGAAATCAGTGGTCCAAAGATTGTATTCCGTTCGCTGATTTTTGGCTTGCTCAGGAGGATGCAATATTATGTGCTGTTGTTCATGAATATGGTCCTAACTGGTGTTTGGTTAGCGATGTGCTTAATAGCATGACTGGTGGTGGGTCATACAGGGGGAGATATCGTCATCCTGTCCATTGCTGTGAAAGGTTTAGAGAACTATTCCAGAAGAATGTCTTGTCAATGGATAATACAAATAATGAGAAGATCAACAGTTCTGGTTCTGGAAAGGCTCTTCTTAAAGTTACAGAGGATAACATCCGGATGCTTTTAGATGTTGCTTCTGAGCAGGTAAATAGGGAGTTGTTGCTGCAAAAGCATTTTTTTGCATTGCTTTCATCTGTCTGGAAAGTGGCATCACATGTTGACCGCAGGAAAAATCCATCACCCACCTGTAATGGTCTCTATTTCGATCAGAGTTTTTTTACTTCTATTGGCCAGCCTTCCCAAAATTCCTTGAAGAAAAACTCTGAAAAGATGGTATTTGCAAATTTGGCCCAGAGTAAGAAGTTAGTTGCAGCTGCACTTGATGATACCACAACTAGGGAAGTGAATGACAGAGTCATCCTCTCTAACCAAGGGGAAGGAATGCCAATGAGTGCAGAACGACTGGATATAATGCTGGAGTTCCCAAAAGAGGAGAGTGATGTCTTTTCTTCATTTCCATCAGTTATAAATTTATCCATACATGGGACTGAACCAACACCATGTTCAAGTAAGCAAACAGGAGAAGATGACTTCAAAGTTGGTCTGTTCATTGCAGAGAATCGATTCAGGGAAGCATCAAGAATTTGTGAAGAAGACAGCTCTGGATGGGCATCATCTGCATTCCCAACCAACGATGCAAGGTCTCGACCTGGATCCAGGATGCAATCCTCTGGAAAGCAGAAGTCTTCTGTATCTGACTCTGCTAAGCCTTCTAGGTCAAAGTCCAAAAGAGCATCAATTGATCCTAGTGAAATGCAGCAGCATCAAGCTGACTCAATATTCCAGTCAGTGCCATCATTTAATCTGAGATTTGATCTCGGTTCATCTACAACAGATGAAGTTGGAATTGATGCTGTGGATAGATGTTTCCCCTTTTTTGACTTGAATGGGGAAAGTTCATGGGAAATGGAGTGTACTGGAATGATTCAACACGATTATGTTGCTGGTTTAATCTCAGAACTTGATGATTGTACAACATTCCCTGAATATACTGACATTAGATGA 6495 0.4066 MASKGPRSKIDHESRAKRQKALEAPREPRRPKTHWDHVLEEMVWLSKDFESERKWKLAQAKKVALRASKGMIDQATRGEKKMKEEEQRLRKVALNISKDVKKFWTKIEKLVLYKHQMELDEKKKKALDKQLEFLLGQTERYSTMLAENLVDGPHKSGENNSVEHHISIQRKEVHGDVINEPKEADVVEYHSDAADNDDEYDVQSDDESEDDEQTIEQDEALITKEERQEELEALHDEMDLPIEELLKRYAGEKGESVMKEDVEMVVIRAGDGKKGLASENGDDHLSVSKTDTNNSSMVSGRRCEESNGDVATPANNLSQCEDGQSENLKEVPSETANEDFAYDFTDEEHATAGSRAEQSFTAEDGDFLLGTEDKVGLVVYVFYMYSAFLMAGGLQHVNCDIDIMTETFKGMPSNCCGPQYLSKVSGWARNQVLFPMVSVSANAQLSFVVLFSHMITWATIKYDFLQLNADTGVARSYGGLDDETTLSDEEKLERVDAIDPKDEIALLQKESEMPVEELLARYKRDPSDNEDGEYESDYASALSEDHLDSPVYEDAGQKDPSVPMDEDINSCEHLATVQSQAEEHWESPHENLDQRESEHIIADAAAAARSAQPTGNTFSTTNVRTKFPFLLKYSLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTISLLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKLKRQGWLKPNSFHVCITTYRLVIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFSNPISGMVEGEEKINKEVVDRLHNVLRPFLLRRLKRDVEKQLPMKHEHVIYCRLSKRQRNLYEDFIASSETQATLASANFFGMISIIMQLRKVCNHPDLFEGRPIVSSFDMCGIDIQLSSSVCSMLLSTPFSIVDLRGLGLLFTDLDYRMAAWESDEVQAIETPATSIMERTDLAELEVIRPLKCQKNLQGTNIFEEIQRAIWEERLKQAKERAAAVAWWNSLRCRKRPMYSTTLRDLVTLSHPVYDIHQVKANPASYMYSSKLADIVLSPIERFQKMTDVVESFMFAIPAARAPSPVCWCSTSEANVFLQPSYKQKCSEVLLPLLSPIRPAIVRRQVYFPDRRLIQFDCGKLQELANLLRKLKSEGHRALIFTQMTKMLDILEAFINLYGYTYMRLDGSTQPEERQTLMQRFNTNPKYFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDNLVIQSGGYNTEFFKKLDPMELFSGHRTLSIKNMPKEKTQNNGEVSVTNADVEAALKCVEDEADYMALKKVELEEAVDNQEFTEEAIGRLEEDEYVNEDDEPAELGESVSNLNKENALMLNGSDHKEDRPPHTVAVKEDDADMLADVKQMAAAAAAAGQAISAFENELRPIDRYAIRFLELWDPIIDKTALESEVRIEDTEWELDRIEKYKEEMEAEIDEDEEPLVYESWDADFATMAYRQQVEALAQHQLMEELEYEARQKEAEEEACDSKKTIPGDLKPKSKKKPKKAKFKSLKKGSLNSGLKPVKEESQAEPMNIDDEDVNGLDFVSPNSAMQKKRKKSKLTTDGEEDKRHKKSKKFKRDPPDFYSSDFESNSLVLHYEHAELKTCESLVDLEQRTSGRSKMGGKISITPMPVKRIWTIKPEKLKKGNQWSKDCIPFADFWLAQEDAILCAVVHEYGPNWCLVSDVLNSMTGGGSYRGRYRHPVHCCERFRELFQKNVLSMDNTNNEKINSSGSGKALLKVTEDNIRMLLDVASEQVNRELLLQKHFFALLSSVWKVASHVDRRKNPSPTCNGLYFDQSFFTSIGQPSQNSLKKNSEKMVFANLAQSKKLVAAALDDTTTREVNDRVILSNQGEGMPMSAERLDIMLEFPKEESDVFSSFPSVINLSIHGTEPTPCSSKQTGEDDFKVGLFIAENRFREASRICEEDSSGWASSAFPTNDARSRPGSRMQSSGKQKSSVSDSAKPSRSKSKRASIDPSEMQQHQADSIFQSVPSFNLRFDLGSSTTDEVGIDAVDRCFPFFDLNGESSWEMECTGMIQHDYVAGLISELDDCTTFPEYTDIR 2164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g00255 2164 Coils Coil 1392 1412 - -
Spst7g00255 2164 MobiDBLite consensus disorder prediction 2030 2087 - -
Spst7g00255 2164 FunFam Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 881 946 - -
Spst7g00255 2164 MobiDBLite consensus disorder prediction 1659 1683 - -
Spst7g00255 2164 Pfam SNF2-related domain 652 924 IPR000330 GO:0005524|GO:0140658
Spst7g00255 2164 Gene3D - 881 936 - -
Spst7g00255 2164 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 647 812 IPR014001 -
Spst7g00255 2164 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1179 1329 IPR001650 -
Spst7g00255 2164 Pfam Helicase conserved C-terminal domain 1176 1288 IPR001650 -
Spst7g00255 2164 Pfam HSA domain 27 93 IPR014012 -
Spst7g00255 2164 CDD SF2_C_SNF 1164 1299 - -
Spst7g00255 2164 MobiDBLite consensus disorder prediction 1 33 - -
Spst7g00255 2164 SMART ultradead3 631 824 IPR014001 -
Spst7g00255 2164 SMART helicmild6 1205 1288 IPR001650 -
Spst7g00255 2164 Gene3D - 1148 1394 IPR027417 -
Spst7g00255 2164 ProSiteProfiles HSA domain profile. 22 94 IPR014012 -
Spst7g00255 2164 MobiDBLite consensus disorder prediction 198 216 - -
Spst7g00255 2164 MobiDBLite consensus disorder prediction 273 333 - -
Spst7g00255 2164 MobiDBLite consensus disorder prediction 309 331 - -
Spst7g00255 2164 FunFam protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1 1146 1395 - -
Spst7g00255 2164 MobiDBLite consensus disorder prediction 287 302 - -
Spst7g00255 2164 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 605 857 IPR027417 -
Spst7g00255 2164 FunFam Photoperiod-independent early flowering 1 605 880 - -
Spst7g00255 2164 SMART bromneu2 23 94 IPR014012 -
Spst7g00255 2164 Coils Coil 1516 1536 - -
Spst7g00255 2164 Gene3D - 604 880 IPR038718 -
Spst7g00255 2164 MobiDBLite consensus disorder prediction 191 219 - -
Spst7g00255 2164 MobiDBLite consensus disorder prediction 2030 2066 - -
Spst7g00255 2164 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 859 1366 IPR027417 -
Spst7g00255 2164 Coils Coil 1571 1591 - -
Spst7g00255 2164 PANTHER HELICASE SRCAP-RELATED 15 2060 - -
Spst7g00255 2164 CDD DEXQc_SRCAP 635 857 - -
Spst7g00255 2164 Gene3D - 1745 1820 - -
Spst7g00255 2164 MobiDBLite consensus disorder prediction 1585 1683 - -
Spst7g00255 2164 MobiDBLite consensus disorder prediction 1585 1600 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g00255 Spst-Chr7 1956200 1973006 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g00255 655 927 RAD5 or RAD16-like Gene Family AT5G43530 29.814 6.05e-28 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Spst7g00255 SNF2_N 8.9e-70 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g00255 K11661 - gmx:100794898 2937.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst7g00255 7 1956200 1973006 Spst7g00255 7 1956200 1973006 ECH