Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g00238 ATGGAACTCGCTTTGAGCTTAGGAGACACGTCCAAGCCCTTCTCTTTTCTCGACAAGCCAGCCAATTTACCCTCCAAGGATCCACCTGGCTTCTGCATAGCGCCGGGGAAAGGGTTTGAGGACAAACGATGTGATGCTGAGAAAAGGGGTTCTTCAGATCCACCAGTTCAACTTGATCTTCTTCCTTTCACTCCGGTTCTCAGATCCCAACCACCCTCTCAGCTTCGCATCCCTTGGCTCGCCGAAGCATGTGGTGGCACGGCGAGGGTGTTGGATGTGAACCTTTTTCCGGTGGCGGCGGAGGACGGCGATGACGGGACGTCGCTGTCGTCGCCGAGCAGTGCGGTGTCGCCGTTTCAGATGGATTTCAGCATGAGAAACGGTAATGCAGAGGTTGGAGGAAGAAACAAGAGGGAACAACTCGAGGGTGAAGGTACCAGAGCGAGTGATGACGAAGAAAATGGCTCAACGCGGAAGAAACTCAGACTCTCCAAAGAACAATCAGCTTTTCTCGAAGAAAGCTTCAAAGAACACACCACCCTCAATCCCAAGCAGAAACTTGCGTTGGCTAAACAGTTGAATCTTCTTCCTCGTCAAGTGGAGGTTTGGTTTCAGAACAGAAGGGCAAGGACAAAGTTGAAGCAAACAGAAGTGGATTGTGAGTATTTGAAGAGATGCTGTGAAACTCTAACAGAAGAGAACAGAAGGTTGCAGAAGGAGCTTCAAGAACTTAGAGCCTTGAAAACTTCTCAACCATTCTACATGCAGCTTCCAGCCACCACTCTCACCATGTGCCCCTCTTGTGAAAGGGTTGCCACAAATTCCACCACAACTAACCAAACTTCTTCCACTATCAACAATAATGGTTCTCAAATCCCTGTCGATTTATCTCTCAGCAAGCCTAGAATATTGCCCTTCCCTAACAGTCAGGCCCAAGCCCAAGCCCACCAGATACCCTCTTCATGA 966 0.4948 MELALSLGDTSKPFSFLDKPANLPSKDPPGFCIAPGKGFEDKRCDAEKRGSSDPPVQLDLLPFTPVLRSQPPSQLRIPWLAEACGGTARVLDVNLFPVAAEDGDDGTSLSSPSSAVSPFQMDFSMRNGNAEVGGRNKREQLEGEGTRASDDEENGSTRKKLRLSKEQSAFLEESFKEHTTLNPKQKLALAKQLNLLPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERVATNSTTTNQTSSTINNNGSQIPVDLSLSKPRILPFPNSQAQAQAHQIPSS 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g00238 321 FunFam Homeobox-leucine zipper protein 18 143 219 - -
Spst7g00238 321 CDD homeodomain 158 215 IPR001356 GO:0003677
Spst7g00238 321 SMART HOX_1 156 218 IPR001356 GO:0003677
Spst7g00238 321 MobiDBLite consensus disorder prediction 125 161 - -
Spst7g00238 321 Coils Coil 220 250 - -
Spst7g00238 321 Pfam Homeobox associated leucine zipper 214 248 IPR003106 GO:0006355|GO:0043565
Spst7g00238 321 CDD bZIP 207 246 - -
Spst7g00238 321 Pfam Homeodomain 158 212 IPR001356 GO:0003677
Spst7g00238 321 ProSiteProfiles 'Homeobox' domain profile. 154 214 IPR001356 GO:0003677
Spst7g00238 321 SUPERFAMILY Homeodomain-like 151 215 IPR009057 -
Spst7g00238 321 ProSitePatterns 'Homeobox' domain signature. 189 212 IPR017970 GO:0000981|GO:0006355
Spst7g00238 321 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 53 287 - -
Spst7g00238 321 SMART halz 214 257 IPR003106 GO:0006355|GO:0043565
Spst7g00238 321 MobiDBLite consensus disorder prediction 132 161 - -
Spst7g00238 321 Gene3D - 162 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g00238 Spst-Chr7 1815568 1817252 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g00238 150 311 Homeobox Transcription Factor Family AT4G37790 65.644 1.41e-68 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Spst7g00238 Homeodomain 5.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g00238 K09338 - gmx:100776113 492.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst7g00238 7 1815568 1817252 Spst7g00238 7 1815568 1817252 ECH
Spst1g03289 1 41474168 41475195 Spst7g00238 7 1815568 1817252 PCT