Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g00234 ATGTCGTGTTGCGGAGATGCAGAAGAGGATTTTGGCGTTCCACCTGCAAACCAATACAATGCAACACCTGAAAAGGGTAATGCATACGGTGGAGGAGGAGGTGATAGACGAGAGCCAAGGGGCAATATTGTGAAAAGTGGTGCTCCACAAAAAGAATTACCAATTGAGATACCTGCTATTTCATTGGGTGACTTAAATCAGTTAACAGACAACTTTGGTACAAAGGCTTTGATAGGAGAAGGTTCTTATGGAAGGGTTTACTATGCAAAGATGAGTGATGGTATGGATGTTGCAATCAAGAAGCTAGATAATACTTCTTCTCCTGAACCTGACTCTGATTTTGCAGCACAATTATCAGTTGTTTCAAGATTGAAAAGTGACCATTTTGTGGAGTTGCTGGGATACTGTCTAGAGGCAAATAATAAAATTTTGGTTTATCAATATGCGAGTTTGGGTTCTTTGCACGACATACTACATGGAAGGAAAGGAGTGCAAGGTGCCGAACCTGGTCCAGCTTTAAACTGGAACCAAAGAGTAAAAATTGCATTTGGTGCTGCCAAAGGACTTGAGTTTCTTCATGAAAAGTGTCAACCTCCAATAGTTCATCGTGATGTTAGATCTAGCAATGTCTTACTCTTCAATGATTATGAATCCAAGATTGCAGATTTCAACCTGACAAACCAATCTTCTGACACTGCAGCTCGACTACACTCAACAAGAGTCTTAGGAACATTTGGTTATCATGCTCCAGAGTATGCAATGACAGGCCAAATAACACAAAAAAGCGATGTTTATAGTTTTGGGGTAGTTCTTTTGGAACTTTTAACAGGAAGAAAGCCTGTTGATCATACAATGCCTAAAGGGCAACAAAGTCTTGTAACTTGGGCAACTCCAAGATTGAGCGAAGACAAAGTGAAACAATGTGTGGATCCTAAACTAAACAATGAATACCCACCCAAGGCAATTGCTAAATTAGCAGCAGTTGCAGCACTTTGTGTACAATATGAAGCTGACTTCAGGCCAAACATGACCATTGTTGTCAAAGCTCTCCAACCACTTCTCAATTCAAAACCAGCTGGCCCTGATCCTAACTCTAACCCTAATCCTAATCCTAATCCTAATGCTTAA 1128 0.4051 MSCCGDAEEDFGVPPANQYNATPEKGNAYGGGGGDRREPRGNIVKSGAPQKELPIEIPAISLGDLNQLTDNFGTKALIGEGSYGRVYYAKMSDGMDVAIKKLDNTSSPEPDSDFAAQLSVVSRLKSDHFVELLGYCLEANNKILVYQYASLGSLHDILHGRKGVQGAEPGPALNWNQRVKIAFGAAKGLEFLHEKCQPPIVHRDVRSSNVLLFNDYESKIADFNLTNQSSDTAARLHSTRVLGTFGYHAPEYAMTGQITQKSDVYSFGVVLLELLTGRKPVDHTMPKGQQSLVTWATPRLSEDKVKQCVDPKLNNEYPPKAIAKLAAVAALCVQYEADFRPNMTIVVKALQPLLNSKPAGPDPNSNPNPNPNPNA 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g00234 375 ProSitePatterns Tyrosine protein kinases specific active-site signature. 200 212 IPR008266 GO:0004672|GO:0006468
Spst7g00234 375 ProSitePatterns Protein kinases ATP-binding region signature. 78 101 IPR017441 GO:0005524
Spst7g00234 375 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 19 358 - -
Spst7g00234 375 MobiDBLite consensus disorder prediction 355 375 - -
Spst7g00234 375 MobiDBLite consensus disorder prediction 1 48 - -
Spst7g00234 375 FunFam probable protein kinase At2g41970 45 148 - -
Spst7g00234 375 Pfam Protein tyrosine and serine/threonine kinase 76 350 IPR001245 GO:0004672|GO:0006468
Spst7g00234 375 FunFam PTI1-like tyrosine-protein kinase 3 150 359 - -
Spst7g00234 375 Gene3D Transferase(Phosphotransferase) domain 1 150 362 - -
Spst7g00234 375 ProSiteProfiles Protein kinase domain profile. 72 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst7g00234 375 SMART tyrkin_6 72 350 IPR020635 GO:0004713|GO:0006468
Spst7g00234 375 SUPERFAMILY Protein kinase-like (PK-like) 52 350 IPR011009 -
Spst7g00234 375 Gene3D Phosphorylase Kinase; domain 1 45 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g00234 Spst-Chr7 1793822 1796270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g00234 57 372 Receptor kinase-like Gene Family AT3G58690 43.789 8.91e-88 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Spst7g00234 PK_Tyr_Ser-Thr 2.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g00234 - - pvu:PHAVU_007G261200g 657.521