Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g00222 ATGAGAACTTCGTGGGCGGAATCTGCTGACAACTCAGCCATTGGTTCTGGCAATGGCAATTCCTCAGCTTACCCTCCACGCGGAGCATATGTGCCACCGCATCTTCGCAACAGGTCGTTACCGTCGGAGGTTCCTCCGGCGGCGGCTTCTTTGCCGGTGAATGACCGGGTGAATCATGGTGGTCCAGCTCCTCATCACGGTGGTGGTTACTTTAAAGCTGATCAGGGGCGGCAACAAGGACACGGTTCTGGTTATCAGACTGGTGGGGGCTGGAATGTGAGAGGGGCGGGGAGGGACCGTGGGAGGCGTGAGGTAAACCCTTTTGAGAATGACGAAGCTGAGGAGCAATCTTTTAGTGAGCAAGAGAATACTGGGATTAACTTTGAGGCTTATGATGATATACCTGTGGAGACTAGTGGGGAGAATGTGCCCCCGCCGGTGAATACATTTGCCGAAATAGACTTGGGCGAGGCATTGAATCAGAATATACAAAGATGCAAGTACGTGAAACCAACCCCGGTTCAGAGGTATGCCATTCCAATTTCCCTTTCGGGGCGAGACTTGATGGCCTGTGCTCAGACTGGGTCAGGAAAGACAGCTGCCTTTTGCTTCCCTATTATAAGTGGAATAATGAGGGAGCAATATGTTCAAAAGCCACGCGTCGCTAGAACTGCTTTTCCGTTGGCACTTATCCTCTCCCCTACACGGGAACTTTCATGTCAGATACACGATGAGGCCAAAAAGTTTTCTTACCAAACAGGTGTCAAAGTGGTGGTTGCTTATGGAGGAGCTCCAATCACTCAACAGTTACGGGAGCTTGAGAGGGGCGTTGATATTCTGGTGGCTACACCTGGACGATTAGTGGATTTGCTTGAGAGGGCTCGGGTTTCACTGCAGATGATAAGGTATTTGGCTCTTGACGAGGCAGATCGGATGCTGGACATGGGTTTTGAGCCTCAAATAAGAAAGATAGTTGAACAAATGGACATGCCTCCTCCAGGCATGAGACAGACACTGCTATTTAGTGCCACATTTCCCAAAGAGATACAGAGACTTGCATCAGATTTTCTTTCAAGTTATGTGTTTCTGGCTGTTGGAAGGGTCGGTTCAAGTACTGATCTAATCGCTCAAAGAGTAGAATATGTGCTTGAGTCAGATAAGAGGAGCCATCTCATGGATCTTCTTCATGCTCAGAGGGAAAATGGAATTCATGGCAAGCAAGGTCTGACATTAGTTTTTGTGGAAACAAAGAAAGGAGCTGATGCATTGGAACACTGCTTGTGTGTTAATGGATTTCCTGCAGCTAGCATTCATGGTGATAGAACACAACAAGAAAGAGAACTAGCATTGAGGTCGTTCAAGACTGGAAACACACCAATTCTAGTGGCAACGGATGTTGCAGCACGTGGTCTGGACATTCCTCGGGTAGCACATGTGGTAAATTTTGATCTTCCCAATGACATCGATGATTATGTGCACCGAATAGGAAGAACAGGGCGAGCTGGTAAAATGGGATTAGCAACGGCCTTCTTCAATGAAAGTAATTTGTCCTTGGCTAAACCGTTGGCTGATCTGATGCAAGAAGCGAATCAAGAAGTACCTGCCTGGCTCACTCGTTATGCAGCAAGGGCTATTTACAGTGGTGGCAACAGAAATAGGAGGTCAGGGGGATCCCGTTTTGGTGGTCGTGATTTTAGGAGAGAGGGCTCGTTTAATAAATCAACAGATTACTTTGGCGGTGGACCTGGTGGTGTAGCAGGTGGGGGATATGGCAATTATGGTGGAGGTTATAGTCAAGGTGTGACAAGTGCTTGGGATTAG 1821 0.48 MRTSWAESADNSAIGSGNGNSSAYPPRGAYVPPHLRNRSLPSEVPPAAASLPVNDRVNHGGPAPHHGGGYFKADQGRQQGHGSGYQTGGGWNVRGAGRDRGRREVNPFENDEAEEQSFSEQENTGINFEAYDDIPVETSGENVPPPVNTFAEIDLGEALNQNIQRCKYVKPTPVQRYAIPISLSGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQKPRVARTAFPLALILSPTRELSCQIHDEAKKFSYQTGVKVVVAYGGAPITQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGMRQTLLFSATFPKEIQRLASDFLSSYVFLAVGRVGSSTDLIAQRVEYVLESDKRSHLMDLLHAQRENGIHGKQGLTLVFVETKKGADALEHCLCVNGFPAASIHGDRTQQERELALRSFKTGNTPILVATDVAARGLDIPRVAHVVNFDLPNDIDDYVHRIGRTGRAGKMGLATAFFNESNLSLAKPLADLMQEANQEVPAWLTRYAARAIYSGGNRNRRSGGSRFGGRDFRREGSFNKSTDYFGGGPGGVAGGGYGNYGGGYSQGVTSAWD 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g00222 606 FunFam Probable ATP-dependent RNA helicase DDX4 111 365 - -
Spst7g00222 606 CDD SF2_C_DEAD 375 511 - -
Spst7g00222 606 Gene3D - 103 365 IPR027417 -
Spst7g00222 606 CDD DEADc_DDX3_DDX4 149 369 IPR044763 GO:0003724|GO:0005524
Spst7g00222 606 Gene3D - 366 545 IPR027417 -
Spst7g00222 606 Pfam DEAD/DEAH box helicase 172 352 IPR011545 GO:0003676|GO:0005524
Spst7g00222 606 Pfam Helicase conserved C-terminal domain 387 502 IPR001650 -
Spst7g00222 606 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 228 517 IPR027417 -
Spst7g00222 606 FunFam ATP-dependent RNA helicase RhlB 366 544 - -
Spst7g00222 606 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 179 363 IPR014001 -
Spst7g00222 606 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 390 541 IPR001650 -
Spst7g00222 606 SMART helicmild6 421 502 IPR001650 -
Spst7g00222 606 MobiDBLite consensus disorder prediction 1 23 - -
Spst7g00222 606 MobiDBLite consensus disorder prediction 1 121 - -
Spst7g00222 606 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 118 541 - -
Spst7g00222 606 MobiDBLite consensus disorder prediction 96 110 - -
Spst7g00222 606 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 148 176 IPR014014 GO:0003724
Spst7g00222 606 SMART ultradead3 167 378 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g00222 Spst-Chr7 1648278 1653709 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g00222 146 534 Eukaryotic Initiation Factors Gene Family AT3G19760 30.867 3.69e-60 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g00222 K11594 - gmx:100818326 1040.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst7g00222 7 1648278 1653709 Spst7g00222 7 1648278 1653709 ECH