Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g00213 ATGAGACAAAAGATGGAATCTCAGGTGAAGCATGCTATTGTTGTCAAGGTTATGGCCCGTACTGGGTCTAGAGGACAGGTAACTCAGGTTAGAGTTAAGTTTTTGGATGATCAGAACCGTCACATCATGAGGAATGTGAAGGGACCAGTGAGAGAGGGAGACATTCTCACCCTTCTTGAGTCTGAGAGAGAAGCTAGGAGGTTGCGCTAG 210 0.4667 MRQKMESQVKHAIVVKVMARTGSRGQVTQVRVKFLDDQNRHIMRNVKGPVREGDILTLLESEREARRLR 69
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g00213 69 FunFam 40S ribosomal protein S28 1 69 - -
Spst7g00213 69 SUPERFAMILY Nucleic acid-binding proteins 5 69 IPR012340 -
Spst7g00213 69 Gene3D - 1 69 IPR012340 -
Spst7g00213 69 ProSitePatterns Ribosomal protein S28e signature. 60 68 IPR028626 -
Spst7g00213 69 PANTHER 40S RIBOSOMAL PROTEIN S28 5 69 IPR000289 GO:0003735|GO:0005840|GO:0006412
Spst7g00213 69 CDD S1_S28E 10 69 IPR000289 GO:0003735|GO:0005840|GO:0006412
Spst7g00213 69 Hamap 30S ribosomal protein S28e [rps28e]. 1 69 IPR000289 GO:0003735|GO:0005840|GO:0006412
Spst7g00213 69 Pfam Ribosomal protein S28e 8 68 IPR000289 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g00213 Spst-Chr7 1542466 1546048 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g00213 5 69 Cytoplasmic Ribosomal Protein Gene Family AT5G03850 86.154 3.05e-35 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g00213 K02979 - gmx:100788626 100.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst7g00213 7 1542466 1546048 Spst7g00213 7 1542466 1546048 ECH