Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g00197 ATGGAGAAAGCAAACACATCACTAGTGAGAACAAAATCCGATCAGCTAGTGGAATCTATGGTGGCGGCAATGAAGTCGCCGCCATCGAGCGACCACTCCACGAATGGAGTGGTGGAAGGCGGCGGCACCCTTTCGAGGAAGTCGAGCCGGCGGCTGACCGCAGCGTCGCCAGGACGCGGTGGAGGAAAGAACACACACATAAGGAAGTCAAGGAGTGCTCAAATAAGCCAAATGAAGCTGGAGCTTGATGATGTGAGTAGCGGTGCAGCACTTAGCAGAGCCTCAAGTGCTAGCTTGGGACTCTCCTTCTCCTTCACTGGCTTCACCATGCCTCCTGAAGATATTGCTGACTCTAAACCCTTCAGCGATGATGATATCCCTGAAGATATCGAAGCTGGACCTAGGACAAAGTTTCAAACTGAACCTACTTTACCGATATATCTCAAGTTCACAGATGTGAGCTACAAGATAGTGATCAAAGGCATGACAACAACTGAAGAGAAGGATATCTTGAATGGGATCACTGGTTCTGTAAATCCAGGGGAAGTTTTGGCATTGATGGGTCCCTCAGGAAGTGGAAAAACAACTCTTCTAAACCTTCTTGGAGGGAGGTTATGCCATCCTATAAGTGGTGGCTGTATCACTTACAATGATCAACCATATTCCAAGTTCCTTAAGAGCAGGATAGGATTTGTGACACAAGATGATGTTCTGTTTCCTCACTTAACTGTGAAAGAGACTTTGACATACGCAGCCAGGCTAAGGCTTCCAAAGACATTCACGAAGGAGCAAAAAGAAAAACGAGCTTTAGATGTAATCTATGAGCTTGGCTTGGAAAGGTGTCAAGACACTATGATTGGCGGTTCCTTTGTGCGTGGAGTATCTGGCGGTGAGAGGAAGAGAGTTTGCATAGGTAATGAGATCATAATCAACCCGTCTCTTCTTTTTCTTGATGAACCAACATCTGGTTTGGATTCTACAACAGCCTTGAGGATCGTTCAGATGCTACAAGACATAGCAGAGGCTGGTAAAACAGTGGTGACAACAATCCACCAACCATCAAGCCGACTCTTTCACAAATTTGACAAGTTGATCCTTCTTGGAAAAGGGAGCTTGCTTTACTTTGGAAAAGCATCAGAAACAATGACTTACTTCCAGTCTGTAGGATGTTCACCACTTATTTCCATGAACCCAGCAGAGTTTTTGCTAGACCTTGCCAATGGAAACATAAATGATGTTTCCCTACCTTCAGAGTTGGAAGATAGAGTGCAGATGGGAAATGCAGAAGCAGAAACACAAAATGGAAAACCATCACCAGCAGTTGTACACGAGTATCTGGTGGAGGCATATGAAACTCGAGTAGCAGAAACAGAAAAGAAAAGGCTAATGGTTCCTATACCCCTTGATGAAGCAGTAAAGTCTAAAGTGTGCTCTCATAAGAGACAATGGGGAGCAAGTTGGGATGAGCAATATTCCATATTATTTTGGAGAGGAATCAAAGAAAGGAGGCATGACTATTTTAGCTGGTTGAGAATCACCCAAGTTTTATCTACTGCTGTCATCCTAGGATTACTCTGGTGGCAATCAGATACTAAGAACCCAAAAGATCTGCAAGATCAGGCAGGATTACTATTCTTTATTGCTGTTTTCTGGGGATTCTTTCCTGTTTTCACTGCAATATTCACATTCCCTCAAGAGAGAGCCATGCTGAGTAAGGAGAGAGCAGCAGATATGTACAGACTAAGTGCATATTTCCTGGCTAGAACCACAAGTGACCTTCCACTTGACCTCATCTTACCAGTCCTTTTTCTACTTGTTGTTTATTTCATGGCTGGACTCAAACTCAGTGTTGCACCATTTTTTCTCACCATTCTCACTGTCTTCCTCTGCATAGTGGCTGCTCAGGGACTTGGCCTTGCTATTGGGGCCACATTAATGGACTTGAAAAGAGCAACAACTTTAGCTTCAGTAACTGTGATGACCTTCATGCTAGCTGGAGGGTTTTTTGTGCAGAGAGTCCCCATATTTTTTTCATGGATCCGGTACATGTCTTTCAACTACCACACCTACAAACTTTTGCTCAAGGTGCAATATGAAGACATTTCACCCACCATAAATGGCATCAGAATTGATAGTGGTGCCACTGAGGTAGCTGCTCTAATAGTCATGGTTTTTGGCTACCGTTTCTTGGCCTATCTTTCTCTAAGGAGAATGAAACTTCAATCTGGGGTTTAA 2235 0.4403 MEKANTSLVRTKSDQLVESMVAAMKSPPSSDHSTNGVVEGGGTLSRKSSRRLTAASPGRGGGKNTHIRKSRSAQISQMKLELDDVSSGAALSRASSASLGLSFSFTGFTMPPEDIADSKPFSDDDIPEDIEAGPRTKFQTEPTLPIYLKFTDVSYKIVIKGMTTTEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLGGRLCHPISGGCITYNDQPYSKFLKSRIGFVTQDDVLFPHLTVKETLTYAARLRLPKTFTKEQKEKRALDVIYELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASETMTYFQSVGCSPLISMNPAEFLLDLANGNINDVSLPSELEDRVQMGNAEAETQNGKPSPAVVHEYLVEAYETRVAETEKKRLMVPIPLDEAVKSKVCSHKRQWGASWDEQYSILFWRGIKERRHDYFSWLRITQVLSTAVILGLLWWQSDTKNPKDLQDQAGLLFFIAVFWGFFPVFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLDLILPVLFLLVVYFMAGLKLSVAPFFLTILTVFLCIVAAQGLGLAIGATLMDLKRATTLASVTVMTFMLAGGFFVQRVPIFFSWIRYMSFNYHTYKLLLKVQYEDISPTINGIRIDSGATEVAALIVMVFGYRFLAYLSLRRMKLQSGV 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g00197 744 ProSitePatterns ABC transporters family signature. 294 308 IPR017871 GO:0005524|GO:0016887
Spst7g00197 744 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 148 394 IPR003439 GO:0005524
Spst7g00197 744 Pfam ABC transporter 171 322 IPR003439 GO:0005524
Spst7g00197 744 MobiDBLite consensus disorder prediction 26 52 - -
Spst7g00197 744 MobiDBLite consensus disorder prediction 1 73 - -
Spst7g00197 744 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 166 386 IPR027417 -
Spst7g00197 744 FunFam ABC transporter G family member 22 158 388 - -
Spst7g00197 744 CDD ABCG_EPDR 145 376 - -
Spst7g00197 744 SMART AAA_5 180 371 IPR003593 GO:0016887
Spst7g00197 744 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 115 732 - -
Spst7g00197 744 Pfam ABC-2 type transporter 351 412 IPR043926 GO:0140359
Spst7g00197 744 Gene3D - 147 388 IPR027417 -
Spst7g00197 744 Pfam ABC-2 type transporter 489 698 IPR013525 GO:0016020|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g00197 Spst-Chr7 1444952 1453440 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g00197 115 408 Calmodulin-binding Proteins AT2G36910 27.759 1.70e-16 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g00197 K05681 - gmx:100798801 1377.07