Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Spst7g00191 | ATGGAAGGCAAGACCGAAAGTCATATGACATCGGCAGCCGCCTTTGTGGAAGGGGGGATTCAAGAAGCCTGTGATGATTCTTGCAGCATATGCCTTGAGGATTTTTGCAAAAGTGATCCTGCAACTGTCACTAATTGCAAGCATAGGTTCCACCTGCAATGCATTCTGGAATGGTGTCAGAGAAGCTCTCAATGCCCTATGTGTTGGCAGCCTGTCAGCTTGAAGGATGCTACCAGTCAAGAGCTGCTTGAGGCAGTAGAGCTGGAGAGGAGCTTGAGGGATACCCCATCAAGAAATGCTGCTATTTTCCATCATCCAGCAGTTGGTGATTTTGAATTGCAGCATCTACCCATGGGACATGAGTCTGAAATTGAAGAGAGAGTCATTCGGCATTTAGCTGCTGCAGCATCAATGAGGAGAGCACACCACCTCGGCCGAAGGGAAGCTCAACGAACTAGGTCATCTACTCATGGCCGTCCACACTACTTAGTATACTCAACTCAGCCTAGTGCATCTCCATCAGCTGCCGGAGGGGGAAGTGAACCAGCTGCAATTCCTGTAGGGAATCCATCTGCCCCTCTTATATTTGATGGAGCTGAGCAATCATCACCACAGCAGATGCCTCAATTTCCAACTCGGAGTTCTTCTTTAAATTCTGGTTCTACTGTCGCAACAAGTAATCTTCAAGGAGTTCACTCTAATGATAGAAGTTTTGCCTCTCATTCCTTGCCTGCAAGCCATGATGGAGCACAGCCATCCGAGCAATCATTCTCAGATTCTCTGCTTTCCAGATTTAATGCAGTATCCATGAGATACAAAGAATCAATTTCAAAGGGCACAAGGGGATGGAAGGAGAGGCTGTTCTCTCCAAATTCTTCCATGTCAGAACTTGGTTCAGAAGTTAGGAGAGAATTGAATGCCAAAATTGCTAGTGTGTCCCGATTGATGGAGCGCCTTGAAACAGCAAGAGAAGCAAGAGAAAATAATAGCGCTGCAGGCAGTTCTTTATCAAATCATTTGGTGAATCATTCCATCGCAGAGACAAGCCACCAAAACAGTGTGGAAGTTCGAGGAGAGAACTCTTTACGTGACAATAATACTCCAGCTACTTTTTCTGCTAGCCCAGATTCGAAATGA | 1137 | 0.4609 | MEGKTESHMTSAAAFVEGGIQEACDDSCSICLEDFCKSDPATVTNCKHRFHLQCILEWCQRSSQCPMCWQPVSLKDATSQELLEAVELERSLRDTPSRNAAIFHHPAVGDFELQHLPMGHESEIEERVIRHLAAAASMRRAHHLGRREAQRTRSSTHGRPHYLVYSTQPSASPSAAGGGSEPAAIPVGNPSAPLIFDGAEQSSPQQMPQFPTRSSSLNSGSTVATSNLQGVHSNDRSFASHSLPASHDGAQPSEQSFSDSLLSRFNAVSMRYKESISKGTRGWKERLFSPNSSMSELGSEVRRELNAKIASVSRLMERLETAREARENNSAAGSSLSNHLVNHSIAETSHQNSVEVRGENSLRDNNTPATFSASPDSK | 378 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Spst7g00191 | 378 | MobiDBLite | consensus disorder prediction | 327 | 378 | - | - | |
| Spst7g00191 | 378 | MobiDBLite | consensus disorder prediction | 196 | 258 | - | - | |
| Spst7g00191 | 378 | Pfam | Ring finger domain | 26 | 68 | IPR001841 | - | |
| Spst7g00191 | 378 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 18 | 85 | IPR013083 | - | |
| Spst7g00191 | 378 | MobiDBLite | consensus disorder prediction | 323 | 378 | - | - | |
| Spst7g00191 | 378 | Coils | Coil | 302 | 329 | - | - | |
| Spst7g00191 | 378 | FunFam | E3 ubiquitin-protein ligase RHF2A isoform X1 | 6 | 78 | - | - | |
| Spst7g00191 | 378 | MobiDBLite | consensus disorder prediction | 156 | 175 | - | - | |
| Spst7g00191 | 378 | ProSiteProfiles | Zinc finger RING-type profile. | 28 | 68 | IPR001841 | - | |
| Spst7g00191 | 378 | MobiDBLite | consensus disorder prediction | 139 | 258 | - | - | |
| Spst7g00191 | 378 | SUPERFAMILY | RING/U-box | 20 | 75 | - | - | |
| Spst7g00191 | 378 | PANTHER | ZINC FINGER, RING/FYVE/PHD-TYPE | 13 | 76 | - | - | |
| Spst7g00191 | 378 | SMART | ring_2 | 28 | 68 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Spst7g00191 | Spst-Chr7 | 1412509 | 1414982 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Spst7g00191 | 25 | 76 | C3H Transcription Factor Family | AT4G00335 | 46.154 | 1.14e-11 | 61.6 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Spst7g00191 | K19043 | - | gmx:100803582 | 632.869 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Spst7g00191 | 7 | 1412509 | 1414982 | Spst7g00191 | 7 | 1412509 | 1414982 | ECH | |
| Spst1g02636 | 1 | 34785025 | 34787829 | Spst7g00191 | 7 | 1412509 | 1414982 | PCT |