Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g00176 ATGTCAAAGAAGAACGTGGTGAGTAAGAAGACCAAGGGTCGACAGAAGATTGAGATAAAAAGGATGAGCAACGAGCATAACCTTCGGGTGACATTCTCCAAGCGTCGAACTGGGATTTTCAAGAAGGCCAGTGAGCTTGCCACCCTCTGTGGAGTGGACATCGCTGTCATCATGTTTTCTCCAAGTAACCAGGTCTTCTCCTTCGGCAGCCCCAATGTGGATCCTGTCATCCAACGCTACACGGCGCAGGGCCCTCCTCCCCTCCTCACTCTCGACCTCAACGAGGCTCACACCACCGTCGATGAGGGTGAGCTCCATGCGCAACTCAACAACCTCTCTGACCAGATGGCGGCGGAGAAGAAGCACGCGGAGTGTCTCAAACGTTTGATGAAGGACGTCGAGGACCACTCTTGGTGGGCCATGCCCCTGGAAACCATGACTGATGCTCAACTCGAGAAGTACAAGAAGATGTTGGAGGATCTCAAAGCCCGTGTCAATGAAAAACGTGAGAAACTCCTGCTTGAGAGCACCTTTACTTATAACTCACAAGCTCAGCTTTTTACAGGCGCAAACTCCTTCTCCAGTGTTAATAACACTGACACCATGCATCCGCCATTGTCCTTGTAG 627 0.5136 MSKKNVVSKKTKGRQKIEIKRMSNEHNLRVTFSKRRTGIFKKASELATLCGVDIAVIMFSPSNQVFSFGSPNVDPVIQRYTAQGPPPLLTLDLNEAHTTVDEGELHAQLNNLSDQMAAEKKHAECLKRLMKDVEDHSWWAMPLETMTDAQLEKYKKMLEDLKARVNEKREKLLLESTFTYNSQAQLFTGANSFSSVNNTDTMHPPLSL 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g00176 208 Coils Coil 109 129 - -
Spst7g00176 208 SMART madsneu2 12 71 IPR002100 GO:0003677|GO:0046983
Spst7g00176 208 CDD MADS_MEF2_like 13 80 IPR033896 GO:0000977|GO:0045944
Spst7g00176 208 Gene3D - 24 86 IPR036879 GO:0003677|GO:0046983
Spst7g00176 208 PANTHER MADS BOX PROTEIN 14 168 - -
Spst7g00176 208 ProSiteProfiles MADS-box domain profile. 12 72 IPR002100 GO:0003677|GO:0046983
Spst7g00176 208 Coils Coil 151 175 - -
Spst7g00176 208 SUPERFAMILY SRF-like 13 90 IPR036879 GO:0003677|GO:0046983
Spst7g00176 208 PRINTS MADS domain signature 49 70 IPR002100 GO:0003677|GO:0046983
Spst7g00176 208 PRINTS MADS domain signature 14 34 IPR002100 GO:0003677|GO:0046983
Spst7g00176 208 PRINTS MADS domain signature 34 49 IPR002100 GO:0003677|GO:0046983
Spst7g00176 208 FunFam Agamous-like MADS-box protein AGL62 24 88 - -
Spst7g00176 208 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 21 68 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g00176 Spst-Chr7 1329500 1330126 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g00176 9 165 Type I MADS-box Gene Family AT5G60440 46.584 1.31e-41 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Spst7g00176 SRF-TF 6e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g00176 - - ccaj:109815930 247.669