Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g00175 ATGAACAACACAACTGATTCATCTGGGTTCCTTGGCTCCAGCAACGTAAGTGGCTTTGGCATGGGCATAGGAATTTCAATTGGGATTCTTCTTCTTATCACAACCATCACACTCACTTCCTACTTCTGCACCAGGGGACAGGTGCCAACTGCTCCAAGGAGAAGAACTACCACCGGCCCAAGATTCCTTGAGTCACAGCACACAGTAGTCGATGTTGGGCTAGATGAAGCCACAATCATGAACTACCCCAAGATGCTGTACTCTGAAGCCAAGCTAAGCAAGTCAGATTCCACAGCAACGAGCTGTTCCATATGTCTGGGAGATTACAAAAGTTCTGATTTACTAAGGGTATTGCCCGATTGTGATCATGTCTTTCACCTAAAGTGCATAGACCCATGGCTGAGGCTGCATCCTACTTGTCCTCTCTGCAGAACATCCCCTATACCAACACCTCTCTCAACACCTCTGGCAGAAGTTGTCCCATTAGCAACAAGGCGAGATTAA 504 0.4722 MNNTTDSSGFLGSSNVSGFGMGIGISIGILLLITTITLTSYFCTRGQVPTAPRRRTTTGPRFLESQHTVVDVGLDEATIMNYPKMLYSEAKLSKSDSTATSCSICLGDYKSSDLLRVLPDCDHVFHLKCIDPWLRLHPTCPLCRTSPIPTPLSTPLAEVVPLATRRD 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g00175 167 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 158 IPR045899 -
Spst7g00175 167 SMART ring_2 102 143 IPR001841 -
Spst7g00175 167 CDD RING-H2_EL5-like 101 144 - -
Spst7g00175 167 FunFam E3 ubiquitin-protein ligase ATL6 63 149 - -
Spst7g00175 167 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 148 IPR013083 -
Spst7g00175 167 SUPERFAMILY RING/U-box 78 149 - -
Spst7g00175 167 Pfam Ring finger domain 101 144 IPR001841 -
Spst7g00175 167 ProSiteProfiles Zinc finger RING-type profile. 102 144 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g00175 Spst-Chr7 1325497 1326000 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g00175 6 164 C3H Transcription Factor Family AT2G35910 61.728 1.52e-57 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g00175 - - gmx:121172638 261.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02648 1 34864006 34864521 Spst7g00175 7 1325497 1326000 PCT