Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g00170 ATGGTCACAGTTACAAATGGCTCCTTTTCTATTTCCAAACCTATGACTAGTCGAAAAAACGTTTACGCTGCCTTGTGGTTCTCCATGGCTGCTTCTTCCCTTATCTCCAACATTTCACTCTCTTTTAACTTTTCATACACACTCATAGTCTTCAAACCCCAAAACCTCAAGCCCCAATTTTCCATTGCTTCTGCTCTCTCACATTGTCATCCTCCCCTGTCTTCTGTTTCCTTCCAAGACACTAAAAAACCCCTTCAACTTGAAACCCTCCAAAAACCAGAGCCAAAGGCCTCAAGCTCAAACCTATCAGCGAGGCTCTTTGTGGGAAACTTGCCTTATACGTTGCCCTCTTCTCTGTTGGCTCAACGCTTTGGAGAGGCTGGCAATGTTGTATCCGTTGAGATTGTGTATGATGACATTATGGATAGAAGTAGAGGATTTGCGTTTGTTACAATGGGGAGCGTGGAGGAAGCTGGATGTGCAATTCGAATGTTTGATGGCTCTATGCTGAAGATGGAGGCTGAACAGAATTCATCTGATGGTAATGGCTGTGATGATGGACAGGAAATTGGAGGTAGGATTATTAAGGTAAACATCGCAGAAATACCCAAAAGAGGCAAACGGCAAGTAATGGGTTCAAGCTATAAAGGCTTTGTAGACAGCCCTCACAAGATTTATGCTGGAAACCTTGGTTGGGGTCTGACTTCACAGTGTCTTAGAGATGCCTTTGCTGAGCAACCAGGCTTCCTGAGTGCCAAAGTAATCTATGAAAGGAACAGTGGAAAATCTCAGGGATATGGGTTTGTCACTTTTAAAACTGCTGAGGATGTAGAGGCTGCTTTGAATTCCATGAATGGTGTGGAAGTTCATGGCCGGCCCTTACGACTGAATATAGCTGCAGATAAGGAGACTTTTTCTCATCCCATAATTCATCAAAATGCAAGAAGTAATTTTGATAGCATGGAACTGGTGTTTAAGATCAGCAAACAAGTCTTTGATGAGAATCTTGGAAGGTTGCTCTTGAATGAGAACCGACTATCTCAAGCTCCAATGAAAGAATCTATGGCCAATGGCTTGCACGTGCTTGGTGTTCTTTGTGGGGTTGTGTTTGGTGTGGGAGTTTTGACAATAATGGGGGTGGTTCAAGGTGGCTTTGATGGTGTTTGGTTGGTGTATGGAAGGTCAAACTATGGTGGTGATGCACAACTCAGGAGAAGAAAAAAGGCAAAGAAAAAATGA 1239 0.4334 MVTVTNGSFSISKPMTSRKNVYAALWFSMAASSLISNISLSFNFSYTLIVFKPQNLKPQFSIASALSHCHPPLSSVSFQDTKKPLQLETLQKPEPKASSSNLSARLFVGNLPYTLPSSLLAQRFGEAGNVVSVEIVYDDIMDRSRGFAFVTMGSVEEAGCAIRMFDGSMLKMEAEQNSSDGNGCDDGQEIGGRIIKVNIAEIPKRGKRQVMGSSYKGFVDSPHKIYAGNLGWGLTSQCLRDAFAEQPGFLSAKVIYERNSGKSQGYGFVTFKTAEDVEAALNSMNGVEVHGRPLRLNIAADKETFSHPIIHQNARSNFDSMELVFKISKQVFDENLGRLLLNENRLSQAPMKESMANGLHVLGVLCGVVFGVGVLTIMGVVQGGFDGVWLVYGRSNYGGDAQLRRRKKAKKK 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g00170 412 SMART rrm1_1 105 175 IPR000504 GO:0003723
Spst7g00170 412 SMART rrm1_1 224 297 IPR000504 GO:0003723
Spst7g00170 412 SUPERFAMILY RNA-binding domain, RBD 94 170 IPR035979 GO:0003676
Spst7g00170 412 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 223 301 IPR000504 GO:0003723
Spst7g00170 412 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 104 202 IPR000504 GO:0003723
Spst7g00170 412 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 225 295 IPR000504 GO:0003723
Spst7g00170 412 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 106 171 IPR000504 GO:0003723
Spst7g00170 412 Gene3D - 217 307 IPR012677 -
Spst7g00170 412 Gene3D - 75 216 IPR012677 -
Spst7g00170 412 SUPERFAMILY RNA-binding domain, RBD 220 303 IPR035979 GO:0003676
Spst7g00170 412 PANTHER OS02G0815200 PROTEIN 74 302 - -
Spst7g00170 412 Coils Coil 408 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g00170 Spst-Chr7 1296030 1299200 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g00170 102 305 Eukaryotic Initiation Factors Gene Family AT2G36660 24.510 4.61e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g00170 - - vra:106769956 394.045