Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g00169 ATGAACGACTTGTTCTCGGGCTCCTTCTCCCGCAACAACGAGCAAGTCTCGCCTGGCCACCACCACGTGGTGGAGATGTCCGCCGTGGAGGGCGGCGCGAACCTGGACAAGTTCTTTTTGGAAGTTGAGCCGGTAAAAGAAGAGTTGAAAGAGCTAGATCGTCTCCATGAGAACTTACGTGGTTCCCACGAAAGGAGCAAGACCCTTCACAGCGCAAAAGCTGTGAAAGAGCTTCGCTCAACCATGGACGCCGATGTAACCCTGGCTTTAAAGAAAGCCAAGGTAGTCAAGGTCCAGCTCGAAGGGTTGGACCGGTCTAACGAGTCAAGCCGGAACTTGCCTGGTTCTGGACCTGGTTCATCCTCAGACCGGACCAGAACATCCGTGGTGAACGGATTGAGGAAGAAGCTGAAGGACTCGATGGACAGCTTCAATAGCCTTCGACAACAGATATCGTCAGAGTACAGGGAAACCGTGCAGCGGAGATATTATACCGTCACCGGAGAGAACCCTGATGACAAAACCATCGACCTTCTCATTTCTACTGGAGAGAGTGAAACGTTTTTGCAGAAAGCGATTTCGCAGCAAGGTAGAGCGAGCGTGATGGAGACGATCCAAGAGATTCAAGAGAGGCACGACACAGTGAAAGAGATAGAGCGAAACCTGAAGGAGCTGCACCAAGTGTTCCTGGACATGGCCGTGCTGGTGCAGTCGCAGGGCGAACAATTGGACGACATAGAGAGCCACGTCGCACGTGCCAACTCGTACGTGCGAGATGGGGTCCATCAGATCCATGTAGCGAGGAAGCACCAGATAAACAGCCGAAAGTGGAGCTGCATCGGCATCCTTCTGCTCATCATCATCATCTTAATCATAGTTCTCCCCATTGTCCTCAGAAATTGA 903 0.5216 MNDLFSGSFSRNNEQVSPGHHHVVEMSAVEGGANLDKFFLEVEPVKEELKELDRLHENLRGSHERSKTLHSAKAVKELRSTMDADVTLALKKAKVVKVQLEGLDRSNESSRNLPGSGPGSSSDRTRTSVVNGLRKKLKDSMDSFNSLRQQISSEYRETVQRRYYTVTGENPDDKTIDLLISTGESETFLQKAISQQGRASVMETIQEIQERHDTVKEIERNLKELHQVFLDMAVLVQSQGEQLDDIESHVARANSYVRDGVHQIHVARKHQINSRKWSCIGILLLIIIILIIVLPIVLRN 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g00169 300 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 205 267 IPR000727 -
Spst7g00169 300 PANTHER SYNTAXIN 51 291 IPR045242 -
Spst7g00169 300 FunFam Syntaxin 132 198 298 - -
Spst7g00169 300 CDD SynN 35 192 IPR006011 GO:0016020
Spst7g00169 300 Pfam SNARE domain 241 293 IPR000727 -
Spst7g00169 300 CDD SNARE_syntaxin1-like 204 264 - -
Spst7g00169 300 SUPERFAMILY t-snare proteins 33 260 IPR010989 GO:0016020|GO:0016192
Spst7g00169 300 MobiDBLite consensus disorder prediction 103 128 - -
Spst7g00169 300 Gene3D - 195 298 - -
Spst7g00169 300 MobiDBLite consensus disorder prediction 102 128 - -
Spst7g00169 300 Pfam Syntaxin 37 240 IPR006011 GO:0016020
Spst7g00169 300 ProSitePatterns Syntaxin / epimorphin family signature. 211 250 IPR006012 GO:0005484|GO:0006886|GO:0016020
Spst7g00169 300 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 32 162 - -
Spst7g00169 300 SMART tSNARE_6 200 267 IPR000727 -
Spst7g00169 300 SMART SynN_4 30 156 IPR006011 GO:0016020
Spst7g00169 300 Gene3D - 32 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g00169 Spst-Chr7 1292605 1293809 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g00169 31 279 SNARE and Associated Proteins AT3G11820 73.494 2.13e-135 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g00169 K08486 - gmx:100808718 453.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst7g00169 7 1292605 1293809 Spst7g00169 7 1292605 1293809 ECH
Spst1g02654 1 34947396 34949166 Spst7g00169 7 1292605 1293809 PCT