Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g00167 ATGAACGACTTGATCTCCGGTTCCTTCTCTCGCTTCCGGGGCGACCGCTCCCCAGACCCCCACCACGTGATCGAGATGTCCGGCGCCGGGGATGGCCCCCCGGGCGGCAAAGTGAACTTTGACAAGTTCTTCGAGGACGTGGAGGGCGTGAAAGAGGAGCTCAGGGAGTTGGAGGGACTAGCGGCGAGTCTGAGGAGCAGCCACGAGCAGAGCAAGACGCTGCACAACGCTAACGCCGTCAGGGACCTCCGTTCGCGCATGGACGGCGACGTTTCGCTGGCTCTCAAGAAGGCCAAGCTCATCAAGCTCAAGCTCGAGGCTCTCGACCGCTCCAACGCCGCCAACCGGAACCTACCAGGCTGTGGACCCGGTTCCTCCTCGGACCGGACCCGAACCTCCGTGGTCAACGGGCTGAAGAAGAAGCTGAGGGACTCCATGGAGAGCTTTAACGAGATTCGCCAGCTCGTGTCGTCGGAGTACCGGGAGACCGTGCAGCGTCGGTACTTCACCGTCACCGGCGAGAATCCCGATGATAACACGCTCGATCTCTTGATTTCCACCGGTGAGAGTGAGACTTTCCTTCAGAAGGCCATTCAAGAACAAGGCAGGGGTAGGATTCTGGACACCATCAATGAGATTCAAGAGAGGCATGATGCTGTCAAAGAGTTGGAGAAGAGTCTGAAGGAGTTGCACCAGGTGTTCCTTGACATGACAGTATTGGTGCAACATCAAGGTGAACAGTTGGATGATATTGAGAGCCATGTGGCAAGAGCTCAATCGTTTGTGCGCACTGGAGCTGAGCAGTTGCAGACTGCACGAAAGCACCAGAAAAATACCAGAAAATGGACCTGTTATTGTATCATACTTCTTCTGGTGATCGTCTTGTTTGTGGTGCTCTTCACTGTGAGGCCGTGGCAACATAGCAGTAGTGGCGGCAATGGTGGTAATCAGCCTGCACCAGCTCTAACACCACCTCCTCCTCCACCTCCTGCCAGTGCTTAA 1002 0.5599 MNDLISGSFSRFRGDRSPDPHHVIEMSGAGDGPPGGKVNFDKFFEDVEGVKEELRELEGLAASLRSSHEQSKTLHNANAVRDLRSRMDGDVSLALKKAKLIKLKLEALDRSNAANRNLPGCGPGSSSDRTRTSVVNGLKKKLRDSMESFNEIRQLVSSEYRETVQRRYFTVTGENPDDNTLDLLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKELEKSLKELHQVFLDMTVLVQHQGEQLDDIESHVARAQSFVRTGAEQLQTARKHQKNTRKWTCYCIILLLVIVLFVVLFTVRPWQHSSSGGNGGNQPAPALTPPPPPPPASA 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g00167 333 MobiDBLite consensus disorder prediction 319 333 - -
Spst7g00167 333 Pfam SNARE domain 246 298 IPR000727 -
Spst7g00167 333 Gene3D - 38 170 - -
Spst7g00167 333 SMART tSNARE_6 205 272 IPR000727 -
Spst7g00167 333 Coils Coil 210 230 - -
Spst7g00167 333 FunFam Syntaxin 132 203 303 - -
Spst7g00167 333 CDD SynN 40 197 IPR006011 GO:0016020
Spst7g00167 333 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 37 167 - -
Spst7g00167 333 PANTHER SYNTAXIN 66 293 IPR045242 -
Spst7g00167 333 CDD SNARE_syntaxin1-like 209 271 - -
Spst7g00167 333 ProSitePatterns Syntaxin / epimorphin family signature. 216 255 IPR006012 GO:0005484|GO:0006886|GO:0016020
Spst7g00167 333 SMART SynN_4 35 161 IPR006011 GO:0016020
Spst7g00167 333 Gene3D - 206 303 - -
Spst7g00167 333 Pfam Syntaxin 42 245 IPR006011 GO:0016020
Spst7g00167 333 SUPERFAMILY t-snare proteins 39 265 IPR010989 GO:0016020|GO:0016192
Spst7g00167 333 Coils Coil 47 67 - -
Spst7g00167 333 MobiDBLite consensus disorder prediction 308 333 - -
Spst7g00167 333 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 210 272 IPR000727 -
Spst7g00167 333 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g00167 Spst-Chr7 1288161 1290311 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g00167 32 328 SNARE and Associated Proteins AT3G11820 73.443 6.51e-152 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g00167 K08486 - gmx:100809258 529.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02655 1 34962052 34963765 Spst7g00167 7 1288161 1290311 PCT