Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g00163 ATGGATAGTGGATGGAAGCCTGAGGTTGAGATATCACCAAATTGTCCTAGGTGCGGTTCTTCCAACACCAAGTTCTGCTACTACAATAACTACAGCTTAACTCAACCAAGGTACTTTTGCAAAGGGTGCAGAAGGTACTGGACCAAAGGAGGGTCTCTCCGAAATGTGCCTGTTGGTGGTGGCTGCAGGAAAAACAGAAGAGCTAACAAGACATTGTTGAGACAATCCATTGATGGTTTCACTTTCAAAAGTTCATCATCACTTTGTGCAAATGCCACAGATCATAATAATAACCCTGTTGAGCATTCTTATGATCCTAGAATAAGGACTTCTGCAGCTTCTAGCTCCTCCTCAGTGGTGAGTGATGGACCAAATATTGATCTTGCACTAGTGTATGCAAATTTCCTCAACCAAAAGCCCAGTTCTGAATCTGGGATTGAGAGCAAAAATAATCCAGATCAAGTTCAAACAGCTTTTGATCCTTCTCTAGTGAATAATTCAAGGCTATCAAACATAGATGTTGCTGGTCCAAGTACTTTGCCTGAAGAAATTGGTCTAAATCTTCCTGAACAAACATACACACACTCTGGTGAGGCTAATAATAACAGCCAAATGTGCTATGGTGAGTTCAACACTATGCAGAATCTTCAAAAAGATGGAATTGAGCAATGCAGTAATCATGGTGGTGCTATGAATTTTGAGCTGCCACCATTGCCGGGTGAAGTGGAAGGCTCACATGATCATCATATGATGTGGTCAAATTCTGAGATGATGATGATAAACCATCGTGCATTTCAAGCCACACAACCACCATTGCTTGGACCTGAAGTTCATGATGCAGACTTGTTAATAGGTAATTGGAGCCCATTTGATTTGCCTTGA 882 0.415 MDSGWKPEVEISPNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRANKTLLRQSIDGFTFKSSSSLCANATDHNNNPVEHSYDPRIRTSAASSSSSVVSDGPNIDLALVYANFLNQKPSSESGIESKNNPDQVQTAFDPSLVNNSRLSNIDVAGPSTLPEEIGLNLPEQTYTHSGEANNNSQMCYGEFNTMQNLQKDGIEQCSNHGGAMNFELPPLPGEVEGSHDHHMMWSNSEMMMINHRAFQATQPPLLGPEVHDADLLIGNWSPFDLP 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g00163 293 ProSitePatterns Zinc finger Dof-type signature. 15 51 IPR003851 GO:0003677|GO:0006355
Spst7g00163 293 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 11 193 IPR045174 GO:0003700|GO:0006355
Spst7g00163 293 ProSiteProfiles Zinc finger Dof-type profile. 13 67 IPR003851 GO:0003677|GO:0006355
Spst7g00163 293 Pfam Dof domain, zinc finger 14 67 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g00163 Spst-Chr7 1244264 1245145 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g00163 5 292 C2C2-Dof Transcription Factor Family AT3G52440 42.000 1.09e-51 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Spst7g00163 zf-Dof 3.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g00163 - - gmx:100794208 514.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst7g00163 7 1244264 1245145 Spst7g00163 7 1244264 1245145 ECH
Spst1g02659 1 34987302 34988078 Spst7g00163 7 1244264 1245145 PCT