Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g00162 ATGGAGGAAATCGACGTGCCTCCGTTCTTCGTGTGCCCTATTTCCCTCGAACTCATGAAAGACCCCGTGACAGTCTCCACCGGAATCACCTACGACCGCCCCAGCATCGAGAAATGGCTCTTCGCCTCAAACAACGACACTTGTCCCGTCACCAAGCAGCCTCTCCTCCCGGACCTCACTCCCAACCACACCCTCCGCCGACTCATCCAAGCCTGGTGCACCGTCAACGCCTCCCACGGCATCCAGCGAATCCCAACGCCAAAGCCCCCCGTCGACAAAACCATCATCCAAAACCTCCTCAGAGACGCTTCCGACTCCCCCAACCTCCAGCTCCAGTGCCTCCGAACCCTCAAATCCATCGCTTCCGAGTCCCAAACCAACAAACGTGCCATCGAATCCGCAGGCGCGGTTAAATTCTTAGCTTCGGTTATAACCAACACCATTGCAATAAACTCGTGTTTAGACGATGACGTGGAGCTGGAGTTAAAAACAAGCGTAGCGGATGAAGCATTGAGCTTATTACATAGCATTCAGTTATCCCAACCGGGTTTGAAGACTCTACTGAGTCACCCCGAGTTTATAAACACGTTAACCAAAGTTCTGCAGAGAGGGATCTACGAGTCACGCGCTTACGCTGTTTTTTTACTCAAGTCCTTGTCAGAAGTGGCGGATCCGGTGCACTTGATTAACCTAAAACCGGAACTGTTCGTTGAACTGGTTCAAGTTTTGAAGGACCAGGTTTCGCAGAAGGGTTCGAAAGCCACGCTTCAGACACTGATTCAGGTGTGTCCGTGGGGCAGGAACAGGGTCAAAGCGGTGGAGGCGGGGGCGGTGCCGGTTATCGTGGACCTTCTTCTCGAATGCAGGGAGCGGAAGCCCTGCGAGATGATGCTGGTTGTGTTGGAGATTCTGTGTCAGAGTGCGGATGGGCGTGCGGGATTGCTGGCGCACGCGGCGGGGTTGGCGATCGTGGCCAAGAAGATTCTCAGAGTGTCCACGATGGCCAACGATAGGGCGGCGAAGATTCTGTTGGCCGTGTGTAGATTCTCGGCGACGCCCAGCGTGGTGCAGGAGATGGTGCAGCTGGGGGTGGTGGCAAAGCTGTGCTTGATGTTGCAGGTGGATAGTGGGAACAAGGCGAAGGAGAAAGCGAGGGAGATCCTCAAACTGCACGCCAAAGTGTGGAGGAACTCGCCCTGCATACCGGGGCACTTGCTTGCTTCGTATCCCACAAGCGCGTGA 1242 0.5515 MEEIDVPPFFVCPISLELMKDPVTVSTGITYDRPSIEKWLFASNNDTCPVTKQPLLPDLTPNHTLRRLIQAWCTVNASHGIQRIPTPKPPVDKTIIQNLLRDASDSPNLQLQCLRTLKSIASESQTNKRAIESAGAVKFLASVITNTIAINSCLDDDVELELKTSVADEALSLLHSIQLSQPGLKTLLSHPEFINTLTKVLQRGIYESRAYAVFLLKSLSEVADPVHLINLKPELFVELVQVLKDQVSQKGSKATLQTLIQVCPWGRNRVKAVEAGAVPVIVDLLLECRERKPCEMMLVVLEILCQSADGRAGLLAHAAGLAIVAKKILRVSTMANDRAAKILLAVCRFSATPSVVQEMVQLGVVAKLCLMLQVDSGNKAKEKAREILKLHAKVWRNSPCIPGHLLASYPTSA 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g00162 413 SUPERFAMILY ARM repeat 96 378 IPR016024 -
Spst7g00162 413 FunFam RING-type E3 ubiquitin transferase 1 82 - -
Spst7g00162 413 Gene3D - 93 398 IPR011989 -
Spst7g00162 413 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 83 IPR013083 -
Spst7g00162 413 CDD RING-Ubox_PUB 7 55 IPR045210 -
Spst7g00162 413 ProSiteProfiles U-box domain profile. 5 79 IPR003613 GO:0004842|GO:0016567
Spst7g00162 413 SMART Ubox_2 9 72 IPR003613 GO:0004842|GO:0016567
Spst7g00162 413 Pfam U-box domain 6 75 IPR003613 GO:0004842|GO:0016567
Spst7g00162 413 PANTHER WDSAM1 PROTEIN 2 402 IPR045185 GO:0061630
Spst7g00162 413 SUPERFAMILY RING/U-box 3 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g00162 Spst-Chr7 1236526 1237767 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g00162 2 410 U-box Gene Family AT2G35930 55.048 8.41e-169 477
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g00162 - - gmx:100795263 658.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst7g00162 7 1236526 1237767 Spst7g00162 7 1236526 1237767 ECH
Spst7g00162 7 1236526 1237767 Spst1g02661 1 35007189 35008418 PCT