Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g00160 ATGAGGGACCCCGTTACGGCCATAACGGGCATAACATACGATAGAGAAAGCATTGAACAATGGCTATTCACGAACAAGAGCACCACATGTCCCGTGTCCAAACAACCCCTCGCAAGAGACTCTGACCTGACCCCTAACCACACTCTTCGACGGTTGATCCAAGCCTGGTGCACCCAAAACGCTTCACTTGGCATCGTTCGCATTCCAACCCCCAAACCCCCTCTCAACAAAATCCAAGTCCTTAAGCTCCTCAGAGACCTCAACAACCCCAAAAGCCTCGTGCAATTGGAGCTTCTTGCCTCCGAGAACGAGAGGAACAAAAGGTGCTTGCTAGAGGCTGGGGTCCCAAGGGCCATCCTCATCTTCATCGTCAATTGCTATAGAAAAGGTCAAATCCAAAAGGGTCTCCAAGAAGCTCTTAGCATATTGCAACTTCTCAAGATCCCCAAGGAGGAATGGACTTTGCTTGTGAAGGACAACGACCAGACATTGGATTCTCTAACATGGATTCTAGGCAACGAGAAAATGGAAAACTCCATTGCCGTGAAATCCCACGCGGTTGTACTTCTGAAAAGGATCATCAACAAGGGCGACACGTGTCACGTTAGGGAGAGACTGAAACCCGAATTCTTCGAAACAATGGTGAAGATTATGAGACACGGGGTGACCCAACAAGGAACGAGTGCAGCACTTCACGTTCTGTTAAGCGCTTCTTCTTCGACGCGAAACAGGATGATGATGATGGAAGCAGGTGTGGTTCACGAACTCGTGGAGATCGAACTGGGGGCGCCGGAGAAGAGAATCACGGAACTAACGCTAGCTATATTGTTCCACTTGTGTTGTTGCGCCAATGGGAGAGCCAAGTTTTTGAGCCATGAAGGGTCCATTGCGGTTGTGACGGAGAGGATACTGAAGGTGTCTGCGGCGGTGGACGATAGGGCCGTGTTTATTTTGGCGATGGTGGCTAAGTTTTCGGGGACAAACGCGGTTTTGCAGGAGATGTTGAAGGTGGGAAGCATGGCGAAGCTTTGCATGGTGCTTCAGGCTGATAGGGCCAAGTATTTGAAGGACAAAGCCATGGAAATTCTGAAGGAACACACTGGGGTTTGGAGCGACTCTCCTTGCTTTCATCATACGTCGTTTTATAATTACGTGCAGTACTGA 1164 0.4948 MRDPVTAITGITYDRESIEQWLFTNKSTTCPVSKQPLARDSDLTPNHTLRRLIQAWCTQNASLGIVRIPTPKPPLNKIQVLKLLRDLNNPKSLVQLELLASENERNKRCLLEAGVPRAILIFIVNCYRKGQIQKGLQEALSILQLLKIPKEEWTLLVKDNDQTLDSLTWILGNEKMENSIAVKSHAVVLLKRIINKGDTCHVRERLKPEFFETMVKIMRHGVTQQGTSAALHVLLSASSSTRNRMMMMEAGVVHELVEIELGAPEKRITELTLAILFHLCCCANGRAKFLSHEGSIAVVTERILKVSAAVDDRAVFILAMVAKFSGTNAVLQEMLKVGSMAKLCMVLQADRAKYLKDKAMEILKEHTGVWSDSPCFHHTSFYNYVQY 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g00160 387 PANTHER WDSAM1 PROTEIN 1 377 IPR045185 GO:0061630
Spst7g00160 387 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 63 IPR013083 -
Spst7g00160 387 ProSiteProfiles U-box domain profile. 1 63 IPR003613 GO:0004842|GO:0016567
Spst7g00160 387 Pfam U-box domain 1 60 IPR003613 GO:0004842|GO:0016567
Spst7g00160 387 SUPERFAMILY RING/U-box 1 61 - -
Spst7g00160 387 Gene3D - 80 372 IPR011989 -
Spst7g00160 387 SMART Ubox_2 1 56 IPR003613 GO:0004842|GO:0016567
Spst7g00160 387 SUPERFAMILY ARM repeat 96 353 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g00160 Spst-Chr7 1219411 1220879 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g00160 1 379 U-box Gene Family AT3G11840 41.218 9.24e-105 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g00160 - - gmx:100798446 620.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst7g00160 7 1219411 1220879 Spst7g00160 7 1219411 1220879 ECH
Spst1g02661 1 35007189 35008418 Spst7g00160 7 1219411 1220879 PCT