Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g00136 ATGTCCACCGCTGCCGGACCTCCCGACTGCCGTGCCTCGCCGCCACGGGGGACTGCCGGCGCCCCCATCCGCCCGCCGCTCAAGCGCCACCTTGCCTTCGTCACCAAACCACCCTTTGCCCCGCCCGATGAGTACCACAGCTTCTCCTCCATTGACTCTCGCCGCGTCCCCGATGAAGCCGTCGTGGTTAGATCTCCGTACATGAAGCGGAAGGGTGGAATGAATGACAGTGAAGGAGAGGCGCATGCAATAAAGTGGAGTAACAGCCCTGGATACACTAACGTTAGTAACATAACGAATAATAGTCCTTTTAAAACTCCAGTGTCTACAAAAGGTGGAAGGACACAGAAGGCAAAGGCTTCCAAAGAAGGCAGATCATGTCCTCCAACACCCATCTCAAATGCTGGTTCCCCTTCTCCTCTTACTCCTGCCAGCAGCTGTCGTTATGACAGTTCCTTAGGTCTTTTAACCAAGAAGTTCATCAATTTGGTCAAGCATGCGGAGGATGGTATTCTTGATCTAAATAAAGCAGCTGAGACTTTGGAGGTGCAAAAGAGGAGGATATATGACATAACTAATGTTTTGGAAGGCATTGGTCTCATTGAAAAGAAGCTCAAGAACAGAATACATTGGAAGGGAATCGAATCTTCTACATCTGGTGAGGTGGATGGTGATATCTCTGTGCTTAAGGAAGAAGTTGAGAAACTTTCTTTGGAGGAGCAGGGGTTAGACGATCAAATAAGGGAAATGCAAGAAAAATTGAGGAGATTGAGTGAAAATGAAAACAACCAGAAGTGCCTTTTCGTGACTGAGGATGATATTAAGTGCCTACCTTGCTTCCAGAATGAAACTCTAATAGCAATTAAAGCTCCGCATGGAACTACTCTGGAAGTCCCTGACCCTGAGGAAGCTGTAGACTATCCACAGAGGAGATATAGAATCATTCTCAGAAGCACAATGGGTCCCATTGATGTCTACCTTATCAGTCAATTTGAAGAGAAATTTGAAGAGATTAATGGTGCTGAACTCCCCATGATGCCACTTGCTTCCAGTTCTGAGTCCAATGAACAATTAATGACAGAAATGGTTCCTGCTGAATGCAGCAGAAAAGAATTTGAACCTCAAACTCAGCTGTCTTCTCATGCATACTCTGATCTAAATGCTTCACAGGAGTTTGCTGGTGGCATGATGAAAATTGTCCCTTCAGATGTTGATAATGATGCAGATTATTGGCTTCTATCAGATGCTGACGTTAGTATAACAGATATGTGGAGAACAGATTCTACTGTTGATTGGAATGGGGTGGAAATGCTTCATCCTGATTTTGGAATCATTTCGAGGCCTCAAACTCCATCATCTGGGTTTGACGAAGTGCCAACACCAGGAGCAAACTCTAATCAGAAGTGA 1407 0.4563 MSTAAGPPDCRASPPRGTAGAPIRPPLKRHLAFVTKPPFAPPDEYHSFSSIDSRRVPDEAVVVRSPYMKRKGGMNDSEGEAHAIKWSNSPGYTNVSNITNNSPFKTPVSTKGGRTQKAKASKEGRSCPPTPISNAGSPSPLTPASSCRYDSSLGLLTKKFINLVKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIHWKGIESSTSGEVDGDISVLKEEVEKLSLEEQGLDDQIREMQEKLRRLSENENNQKCLFVTEDDIKCLPCFQNETLIAIKAPHGTTLEVPDPEEAVDYPQRRYRIILRSTMGPIDVYLISQFEEKFEEINGAELPMMPLASSSESNEQLMTEMVPAECSRKEFEPQTQLSSHAYSDLNASQEFAGGMMKIVPSDVDNDADYWLLSDADVSITDMWRTDSTVDWNGVEMLHPDFGIISRPQTPSSGFDEVPTPGANSNQK 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g00136 468 FunFam E2F transcription factor 1 142 215 - -
Spst7g00136 468 Pfam E2F transcription factor CC-MB domain 229 329 IPR032198 GO:0046983
Spst7g00136 468 Gene3D - 142 215 IPR036388 -
Spst7g00136 468 MobiDBLite consensus disorder prediction 91 143 - -
Spst7g00136 468 CDD E2F_DD 226 330 IPR032198 GO:0046983
Spst7g00136 468 SUPERFAMILY "Winged helix" DNA-binding domain 148 211 IPR036390 -
Spst7g00136 468 MobiDBLite consensus disorder prediction 91 115 - -
Spst7g00136 468 SUPERFAMILY E2F-DP heterodimerization region 226 330 IPR037241 -
Spst7g00136 468 SMART E2F_TDP_2 148 213 IPR003316 GO:0005667|GO:0006355
Spst7g00136 468 Coils Coil 226 267 - -
Spst7g00136 468 MobiDBLite consensus disorder prediction 1 58 - -
Spst7g00136 468 PANTHER TRANSCRIPTION FACTOR E2F 82 430 IPR015633 GO:0000978|GO:0006357
Spst7g00136 468 Gene3D - 220 330 - -
Spst7g00136 468 MobiDBLite consensus disorder prediction 446 468 - -
Spst7g00136 468 Pfam E2F/DP family winged-helix DNA-binding domain 150 213 IPR003316 GO:0005667|GO:0006355
Spst7g00136 468 MobiDBLite consensus disorder prediction 445 468 - -
Spst7g00136 468 MobiDBLite consensus disorder prediction 127 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g00136 Spst-Chr7 1022757 1026975 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g00136 22 458 E2F-DP Transcription Factor Family AT2G36010 55.675 5.17e-158 455
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Spst7g00136 E2F_CC-MB 2.1e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g00136 K06620 - gmx:100811762 856.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst7g00136 7 1022757 1026975 Spst7g00136 7 1022757 1026975 ECH