Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g00126 ATGAATTGCTCCATCTCCGGCGAAGTTCCGGAAGAGCCCGTGGTATCCAGGAACTCCGGTCTCCTCTTCGAGAAGCGTTTGATTGAGCGACACATTTCGGATTATGGGAAGTGTCCAATTACTGGCGAACCACTTACTATGGAAGACATTGTACCAATCAAGACAGGCAAGATAGTGAAGCCCAGACCTGTTCAGGCAGCTAGTATTCCTGGCATGCTGGGAATGTTCCAAAATGAATGGGATGGGTTGATGCTATCTAATTTTGCATTGGAGCAACAATTGCACACCGCAAGGCAAGAGCTAAGTCATGCTCTGTATCAGCATGATGCTGCCTGCCGAGTGATTGCTAGACTTAAAAAGGAACGAGATGAAGCTAGGTCTTTACTTGCACAAGCAGAAAGACATTTCCCTGTTTCTGCACCAATTGCTGCAACTGCAAATGCCCCTGTTCTGAGCAATGGGAAAAGAGCTGCTGAGGATGAGGACCTGGCTCCTGGTGCCAAGAAAATTCATCCTGGAATATCTTCTAGCATAATTTCTGAGTTAACTGATTGCAATGCTTCTCTTTCCCAGCAGAGAAAGAAGAGACAGATTCCTGCCACTCTGGCTCCTATTGAAGCTCTAGAGTCATATACCCAGATATCTAGTCATCCCTTTCACAAAACAAACAAACAGGGCATTATATCTCTTGATATCCTTTATTCTAAGGCATGGCTTTTAAACATTGACTTGATTGCAACTGGAGGTATTGATACAAATGCTGTTATTTTTGACCGACCATCAGGACAGATATTATCTACGCTTAGTGGTCACTCTAAAAAGGTGACCAGTGTAAAGTTTGTAGCTCAGGGGGAATCATTCTTAACTGGTTCAGCAGATAAGACAGTTCGTCTTTGGCAAGGGTCAGATGATGGTAACTATAACTGCAGACACATCTTAAAAGATCATACAGCTGAGGTGCAAGCTGTCACTGTCCATGCAACCAATAATTATTTTGTGACTGCTTCACTTGATGGCTCTTGGTGCTTTTATGAACTTTCTTCAGGGACATGTTTGACCCAGGTTTTCGACTCTTCAGGTTCTTCTGAAGGCTACACTTCCGCAGCTTTTCATCCTGATGGTCTCATCATTGGAACTGGGACCACTGAATCTCTTGTTAAGATTTGGGATGTAAAAAGCCAGGCAAATGTTGCTAGGTTTGATGGACATATTGGGCCAGTAACCGCCATATCTTTTTCTGAGAACGGATACTTCCTTGCGACTGCTGCTCATGATGGTGTTAAGCTTTGGGATCTACGTAAATTGAAGAACTTCAGGAATTTTGCTCCATATGATTCAGAAACACCAACAAACTCTGTGGAGTTCGACCACAGTGGATCCTACCTTGCAATTGCTGGCTCTGATATAAGGATTTACCAAGTTGCAAATGTGAAATCTGAATGGAACTGTGTTAAAACCTTCCCTGATTTATCCGGAACAGGTAAGGCCACGTGCGTAAAATTTGGTGCAGATTCTAAATATATAGCTGTTGGATCAATGGACCGGAATCTTCGAATATTTGGCTTGCCGGCGGCTCCTGCTGAGTCATAA 1590 0.4358 MNCSISGEVPEEPVVSRNSGLLFEKRLIERHISDYGKCPITGEPLTMEDIVPIKTGKIVKPRPVQAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQAERHFPVSAPIAATANAPVLSNGKRAAEDEDLAPGAKKIHPGISSSIISELTDCNASLSQQRKKRQIPATLAPIEALESYTQISSHPFHKTNKQGIISLDILYSKAWLLNIDLIATGGIDTNAVIFDRPSGQILSTLSGHSKKVTSVKFVAQGESFLTGSADKTVRLWQGSDDGNYNCRHILKDHTAEVQAVTVHATNNYFVTASLDGSWCFYELSSGTCLTQVFDSSGSSEGYTSAAFHPDGLIIGTGTTESLVKIWDVKSQANVARFDGHIGPVTAISFSENGYFLATAAHDGVKLWDLRKLKNFRNFAPYDSETPTNSVEFDHSGSYLAIAGSDIRIYQVANVKSEWNCVKTFPDLSGTGKATCVKFGADSKYIAVGSMDRNLRIFGLPAAPAES 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g00126 529 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 358 393 - -
Spst7g00126 529 CDD WD40 237 520 - -
Spst7g00126 529 SUPERFAMILY RING/U-box 1 53 - -
Spst7g00126 529 ProSiteProfiles Trp-Asp (WD) repeats profile. 268 300 IPR001680 GO:0005515
Spst7g00126 529 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 268 300 - -
Spst7g00126 529 SUPERFAMILY WD40 repeat-like 235 520 IPR036322 GO:0005515
Spst7g00126 529 PANTHER PRE-MRNA-PROCESSING FACTOR 19 1 522 IPR038959 GO:0000398|GO:0000974|GO:0006281|GO:0061630
Spst7g00126 529 Coils Coil 115 135 - -
Spst7g00126 529 Gene3D - 201 522 IPR015943 GO:0005515
Spst7g00126 529 CDD RING-Ubox_PRP19 1 54 - -
Spst7g00126 529 ProSiteProfiles Trp-Asp (WD) repeats profile. 358 399 IPR001680 GO:0005515
Spst7g00126 529 SMART WD40_4 349 390 IPR001680 GO:0005515
Spst7g00126 529 SMART WD40_4 306 345 IPR001680 GO:0005515
Spst7g00126 529 SMART WD40_4 393 431 IPR001680 GO:0005515
Spst7g00126 529 SMART WD40_4 261 300 IPR001680 GO:0005515
Spst7g00126 529 SMART WD40_4 434 473 IPR001680 GO:0005515
Spst7g00126 529 SMART WD40_4 480 521 IPR001680 GO:0005515
Spst7g00126 529 SMART WD40_4 210 258 IPR001680 GO:0005515
Spst7g00126 529 SMART Ubox_2 1 66 IPR003613 GO:0004842|GO:0016567
Spst7g00126 529 Pfam WD domain, G-beta repeat 262 299 IPR001680 GO:0005515
Spst7g00126 529 Pfam WD domain, G-beta repeat 481 520 IPR001680 GO:0005515
Spst7g00126 529 Pfam WD domain, G-beta repeat 396 431 IPR001680 GO:0005515
Spst7g00126 529 ProSiteProfiles Trp-Asp (WD) repeats profile. 400 440 IPR001680 GO:0005515
Spst7g00126 529 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 60 IPR013083 -
Spst7g00126 529 ProSiteProfiles U-box domain profile. 1 70 IPR003613 GO:0004842|GO:0016567
Spst7g00126 529 FunFam Pre-mRNA-processing factor 19, putative 1 58 - -
Spst7g00126 529 FunFam pre-mRNA-processing factor 19 199 522 - -
Spst7g00126 529 Pfam Prp19/Pso4-like 66 131 IPR013915 -
Spst7g00126 529 ProSiteProfiles Trp-Asp (WD) repeats profile. 313 354 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g00126 Spst-Chr7 947162 958000 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g00126 1 523 U-box Gene Family AT1G04510 74.187 0.0 808
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g00126 K10599 - gmx:100527039 1004.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst7g00126 7 947162 958000 Spst7g00126 7 947162 958000 ECH