Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g00111 ATGCAACAGACGGAGGCTTCAAAGCATGTAAGAATGATTACACAAGAGATTCGAAAGTCGTTGGATAGGCACAATATTCTGTACACCACCTTGCTTGAGCTGTCTAAGACGCTTGGTTTGAAAACCTGTGCAGTTTGGATGCCAAACGATGAGAAACCTGAGATGAACCTTACTCATGAATTGAATGGGAGAAATGTCAACTGTTCTATTCCCATCACTAATCCAGATGTTGTGAGAATTAAGGAGAGTGATGAAGTAAACATAATTGATTCTGATTCAGTACTTGTCACTGCAAGTAGTGGAGATTCTGGTAGTGCAGGACCAGTTGCTGCTATTCGAATGCCCATGCTTCGGGTTAGCAACTTCAGCGGGGGAACCCCGGAGATAAGGGAGACATGTTATGCCATATTGGTTTTGATTCTTCCTGTCACCGAACATAAATCATGGAGCGCTCAAGAGCTGGAGATCATTAAGGGGGTTGCTGATCAGGTGGCTGTGGCTCTGTCTCATGCTGCAATTCTTGAAGAGTCTCTTCTGACGAGGGTGAAGTTGGAGGAACAAAATCGAGCATTGCAAGTGGAAAAGATGAATACTATGAGGGCGAACCAGGCTAGAGAAGCATTTCAGAAGATCATGAGCAATGGAATGGGAAAGCCTATGCACTCAATTTTGGGGCTGCTTTCAGTGATGAAAGAAGACAAGTTAAAGAGTGAACAGAAACTCATTGTGGATTCTTTGTTAAGGACCAGTAGTGTCTTGTCAAATCTACTAAATGATGCCATGGACTCAGCAAGGGACGATGGAAGATTCCCTTTGGAGATGAAGCCTTTTGGATTGCATGCTTTGGTGCGGGAGACAGCTTGCCTTGCCAGATTTATGTGTGTTTATAGGTGCCTTGGCTTTGTTGTTGATGCTGATAAGTCTTTGCCAGACAATGTTATTGGTGATGAAAAGAGGGTCTCCCAAGTGCTTATGCATATGATTGGGAGTGCAATAAATGGTAACCAAGGAGGAGGGACTCTTGTGTTCCGAGTTTATGCAGAAGGTGGAAGTCTAGGAAGGAATGATCAGGGATGCTCAAACTGGACACCAAGCTCTTCAAGTGGGGATGTAAATATCAGATTTGAGATAGGGATGAAGAATGGTGCTTCTGAATTGGAGAATTCAGTTCCTACAGGTAAGCCTCCGGGTTCTGTGCGTGCTCGTGATAGGGTTGAGGAAAGATTGAGCTTCAGCATTTGCAAGAGGATAATCCAGTCGATGCAAGGGAACATATGGTTTGTACCAAATGCTGAAGATCATCCTCGAGTCATACACCTTTCTCTTCGGTTTCAACTGCAGCGATCGATGGCGGTATCCATATCTGAAACTGGGGAAATTTATGAGCCATCAAGTTCCGAACCTTCCTTCAGAGGACTTCAAGTCTTGTTGGTCGAGAACGACAATGTAAATAGAGCAGTGACTCAGTGGTTGCTTCAGAAACTAGGTTGCATTGTGACTTCTGTTTCTTCAGGATATGAATGCCTCAGTGCCATTCAACTTGGTGGATGCTCCTTTCAGGTCATTATCTTGGAGCTTCACATGCCTGAGCTTGATGGATTCGAAGTTGCATCCAGGATTCGCAAGTTTGGAAGCCAAAACTGGCCAGTGATTATTGCCTTGACTGCAAGCACGGGAGATTTTTCGGAAAAATGCAAGCAAGTTGGCATGAATGGAGTCATAAGAAAGCCAGTTTTGTTGCAGGGACTTGCCAGTGAACTCAGAAGAATCATGAGTACTGTCTTGTGA 1788 0.4435 MQQTEASKHVRMITQEIRKSLDRHNILYTTLLELSKTLGLKTCAVWMPNDEKPEMNLTHELNGRNVNCSIPITNPDVVRIKESDEVNIIDSDSVLVTASSGDSGSAGPVAAIRMPMLRVSNFSGGTPEIRETCYAILVLILPVTEHKSWSAQELEIIKGVADQVAVALSHAAILEESLLTRVKLEEQNRALQVEKMNTMRANQAREAFQKIMSNGMGKPMHSILGLLSVMKEDKLKSEQKLIVDSLLRTSSVLSNLLNDAMDSARDDGRFPLEMKPFGLHALVRETACLARFMCVYRCLGFVVDADKSLPDNVIGDEKRVSQVLMHMIGSAINGNQGGGTLVFRVYAEGGSLGRNDQGCSNWTPSSSSGDVNIRFEIGMKNGASELENSVPTGKPPGSVRARDRVEERLSFSICKRIIQSMQGNIWFVPNAEDHPRVIHLSLRFQLQRSMAVSISETGEIYEPSSSEPSFRGLQVLLVENDNVNRAVTQWLLQKLGCIVTSVSSGYECLSAIQLGGCSFQVIILELHMPELDGFEVASRIRKFGSQNWPVIIALTASTGDFSEKCKQVGMNGVIRKPVLLQGLASELRRIMSTVL 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g00111 595 SMART HisKA_10 204 269 IPR003661 GO:0000155|GO:0007165
Spst7g00111 595 Gene3D - 268 448 IPR036890 -
Spst7g00111 595 Coils Coil 174 201 - -
Spst7g00111 595 Pfam GAF domain 22 168 IPR003018 GO:0005515
Spst7g00111 595 Gene3D - 1 169 IPR029016 -
Spst7g00111 595 Pfam Response regulator receiver domain 475 584 IPR001789 GO:0000160
Spst7g00111 595 Gene3D - 455 592 - -
Spst7g00111 595 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 2 592 - -
Spst7g00111 595 SMART REC_2 473 587 IPR001789 GO:0000160
Spst7g00111 595 SUPERFAMILY CheY-like 469 591 IPR011006 -
Spst7g00111 595 Gene3D - 170 267 - -
Spst7g00111 595 SMART gaf_1 22 178 IPR003018 GO:0005515
Spst7g00111 595 FunFam Ethylene receptor 4 171 265 - -
Spst7g00111 595 ProSiteProfiles Response regulatory domain profile. 474 591 IPR001789 GO:0000160
Spst7g00111 595 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 261 350 IPR036890 -
Spst7g00111 595 SUPERFAMILY GAF domain-like 26 171 - -
Spst7g00111 595 CDD HATPase_ETR2_ERS2-EIN4-like 309 430 - -
Spst7g00111 595 CDD HisKA 202 265 IPR003661 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g00111 Spst-Chr7 852084 854369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g00111 2 593 Miscellaneous Gene Families AT3G04580 48.520 0.0 548
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Spst7g00111 GAF 5.7e-10 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g00111 K14509 - gmx:100802948 892.108