Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g00106 ATGGCTGAAGAAGAACCTTCCATAACATCGCCACCGGCAGGGACGTTGCACAAGTTTCTCTCCCGCAGTGGCAAGGCCGTCCTCGCCGCGACGCCTCTCACAGTGGTCCGCTCCACCACCAGCACCGGCGGCGCTCGCGTTCTTGCCGCGCCGCCAAAGCTTAACGAGAATGATCCTCCGCAAGAAGAAGGACAAGGCGAAACCGGCTTCGATGTTTCTCATTTCACTTCACCGAACAAAACGCAACAACGGCGCCATGGACTTTCGTTCGAGGAGTTTCTCAAGGTCACGAACACTAAGGTCGCGTCCAAAGAAGAGGCTATAAGATCGATGGCGCCGATGGAAGAAAAAGTAGAAGAGGAGGAGGAAGGAGAAGAGGTCGAATCAACTCCACCGGTTCAACCGGTGCAGAGAGAGTGGGAACCAGTTAAACCGGTGCAGAGAAAAGTGGTTACGGATGACGTGGAGATGGTGGAAGTGCGCAAGGCTGTGCAGAAAAGGTATATTCCGAATCTCGAGGACGGGGAGTTTCCGGAGGATGCTGAATGGTTCTTGCTTGGGAGGAAGGTTGAGGTTGCGGTTTCGACGGCCAGAGGAGTGAACAGATTGGTGGATAATGAAATCATTCATTTCAACTTTCCTCTTCTGACTTACTCGAGGAAGTCCCAGTTGATCGTTCGTGTTTCAACCAAGCGTTCAGGGGAGGTTGGAAGGATGCCAATGGAATGGGCAAAGATTGTGATTCCGCTTATGCACTCTGAAAAGGTTAAGGTTCGAGGTCGATGCATTGCCGCGCCAGATAAACTCCAAATGATGCAAGAGATTATGCTTTTAGTGAGCTTTTATGTTCACCACTCTGTATTTTCTGACCGTGTTGACACCTCTTGGAGGCTAGATGCTTGTGGCAAAATTGATGATACTGTTTACCCACTTCTTGCCCTTCTAAAAATGCTAGAGATTAAGCCAAGTCAAAAGGCTGAATTCACACCAGAGGATATAGATTCTCGAAAGCGATTGCTCTATCCAAAGGCCGAGTCAGATGACGCTGCAGCACTGCCTTTGATCAAGCGAAGAAAGGGTGGTGAGCCTATTCCCGAGCAAAATAATGATGAACAAGCTCTTTCAGAGTCAGCTTTGAATAAAATTGTTGGAGCTGCCGAAATCTATGACCTAAAGGAGAAGGAAGCCCCAAAGACGCTTATGTGTAATCTAAAGCCTTACCAGAAGCAAGCCTTGTATTGGATGGGTGAAATCGAGAAGGGAATGGATGTGGAGAACGCAGAAACAAATCTGCATCCCTGCTGGTCAGCCTACAATATTTGCAATGGAAGGACTATTTATGTCAATATATTTACCGGAGAAGCTTCAAATAAATTTCCCAAATCAACTGAGATGTCAAGAGGAGGAATTCTAGCGGATGCAATGGGACTTGGAAAGACCGTTATGACAATTGCTCTAATACTCAGTAAACCAGGCAGGGGCAACTCAGAAAACAAGGATGCAGGGAATGCATATGATAATATTATCGCAAATAAAAGAAGGAACGCTAACGCGATGCATAGAGTTGAAGGTGGCACTCTTATTGTGTGTCCCATGGCATTGTTAGGTCAATGGAAGGATGAGCTTGAAACGCATTCAAAGCCCGGTAGTATATCCATATTTGTTCATTATGGTGGCGGAAGAACCAATGATCCCTTGTTGATCTCAGGGCATGATGTTGTCTTAACAACTTATGGTGTCCTATCAGCTGCATACAAAAATGATGGAGATAATAGCATCTACCACAAGGTCCAGTGGTACAGGGTGGTGCTTGACGAAGCTCATAATATAAAGGCCCATAGAAGTCAGATTGCCCAGGCTGCTTTTACTCTGTCATCACACAGCCGCTGGTGTCTAACTGGAACACCGCTTCAGAATAGCTTGGAAGACCTGTACAGTCTCTTGTGTTTCTTGCGCGTTGAGCCTTGGTGCAACTTGGCATGGTGGCAGAAGTTGATTCAAAGGCCTTATGAGAATGGTGATTCAAGATCCCTGAAGTTGGTCAAGGCCATTTTGAGGATGCAAATGCTAAGAAGAACAAAGGAATCCAAGGATAAGGAGGGAAGGCCTATACTTTGTCTGCCCCCAATTGATTTTCAATTGATTGAATGTGAACAATCAGAATCTGAACGTGACTTTTATGAAGCCCTTTTCGAGAGATCTAAAATCCAATTCGATCAGTACGTTGCACAAGGAAAGGTTCTTCGCCATTATGCCAATATCCTTGACCTACTAATGCAGTTGAGACGCTGTTGTAACCATCCGTTTTTGGTTATGTGCGGGAGCGATTCCCAGAAATATGCAGCCTTAGGCAGATTCGCTAGAAGATTTCTTCAATCTAATACTGAATCACCCGACAAAAGCAATCAAAATGATACACAGCAGCAAGCAGACTTGAACGAAATGGCAAGTAGATTACTTCTAAAATCTGCTTCTTCGCACTCTATCCAACCGCGTGCATATATTGAAGAAGTTTTGGAGAATATTCAAAAGGGCGACACGGTAGAATGCTCTATATGTATGGAATCTCCGGAAGATCCTGTATTTACACCATGTGCTCATAAATTTTGTAGAGAATGTATATTCAGTTTCTGGAGCACCTCAACGGGTGGCAAATGTCCAATCTGTCGTCAAGTGCTCCAGAAAGACGATCTGATTGATTGTCCATCTGAAAGCCCATTCAAGGTCGATATTAACAACAATGTGACAGAGTCTTCAAAGGTTTCAAAGCTATTTGAATTCCTGCAACGTATTCTGAACTCCCCCTCAGGTGAAAAGAGTATTGTCTTCAGTCAGTGGACATCATTTTTTGATCTGTTGGAAAATCCGTTGAGGCGGAGAGGCATTGGTTTTTTGAGATATGATGGGAAATTGACGCAGAAACAGAGGGAGAAAGTTCTAGATGAATTCAATGAGACTAGAGAGAAAAGGGTTTTGTTGATGTCGCTAAAGGCTGGTGGTGTTGGCTTGAACTTAACTGCAGCCTCGAATGTTTTCATTATGGTATGCTATGCCTATTTCCCTTCTCTCCATAGCCTATCCTGTAGAACAACTTCAATGTTCTATGTTATTGTTTTGTAA 3120 0.4481 MAEEEPSITSPPAGTLHKFLSRSGKAVLAATPLTVVRSTTSTGGARVLAAPPKLNENDPPQEEGQGETGFDVSHFTSPNKTQQRRHGLSFEEFLKVTNTKVASKEEAIRSMAPMEEKVEEEEEGEEVESTPPVQPVQREWEPVKPVQRKVVTDDVEMVEVRKAVQKRYIPNLEDGEFPEDAEWFLLGRKVEVAVSTARGVNRLVDNEIIHFNFPLLTYSRKSQLIVRVSTKRSGEVGRMPMEWAKIVIPLMHSEKVKVRGRCIAAPDKLQMMQEIMLLVSFYVHHSVFSDRVDTSWRLDACGKIDDTVYPLLALLKMLEIKPSQKAEFTPEDIDSRKRLLYPKAESDDAAALPLIKRRKGGEPIPEQNNDEQALSESALNKIVGAAEIYDLKEKEAPKTLMCNLKPYQKQALYWMGEIEKGMDVENAETNLHPCWSAYNICNGRTIYVNIFTGEASNKFPKSTEMSRGGILADAMGLGKTVMTIALILSKPGRGNSENKDAGNAYDNIIANKRRNANAMHRVEGGTLIVCPMALLGQWKDELETHSKPGSISIFVHYGGGRTNDPLLISGHDVVLTTYGVLSAAYKNDGDNSIYHKVQWYRVVLDEAHNIKAHRSQIAQAAFTLSSHSRWCLTGTPLQNSLEDLYSLLCFLRVEPWCNLAWWQKLIQRPYENGDSRSLKLVKAILRMQMLRRTKESKDKEGRPILCLPPIDFQLIECEQSESERDFYEALFERSKIQFDQYVAQGKVLRHYANILDLLMQLRRCCNHPFLVMCGSDSQKYAALGRFARRFLQSNTESPDKSNQNDTQQQADLNEMASRLLLKSASSHSIQPRAYIEEVLENIQKGDTVECSICMESPEDPVFTPCAHKFCRECIFSFWSTSTGGKCPICRQVLQKDDLIDCPSESPFKVDINNNVTESSKVSKLFEFLQRILNSPSGEKSIVFSQWTSFFDLLENPLRRRGIGFLRYDGKLTQKQREKVLDEFNETREKRVLLMSLKAGGVGLNLTAASNVFIMVCYAYFPSLHSLSCRTTSMFYVIVL 1039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g00106 1039 SMART ultradead3 400 662 IPR014001 -
Spst7g00106 1039 SUPERFAMILY RING/U-box 833 896 - -
Spst7g00106 1039 ProSitePatterns Zinc finger RING-type signature. 865 874 IPR017907 -
Spst7g00106 1039 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 218 1014 - -
Spst7g00106 1039 Pfam Zinc finger, C3HC4 type (RING finger) 848 894 - -
Spst7g00106 1039 ProSiteProfiles Zinc finger RING-type profile. 850 890 IPR001841 -
Spst7g00106 1039 Pfam SNF2-related domain 407 770 IPR000330 GO:0005524|GO:0140658
Spst7g00106 1039 Pfam HIRAN domain 196 277 IPR014905 GO:0003676|GO:0008270|GO:0016818
Spst7g00106 1039 Gene3D - 708 1017 IPR027417 -
Spst7g00106 1039 CDD DEXDc_SHPRH-like 404 692 - -
Spst7g00106 1039 MobiDBLite consensus disorder prediction 70 84 - -
Spst7g00106 1039 MobiDBLite consensus disorder prediction 112 136 - -
Spst7g00106 1039 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 390 692 IPR027417 -
Spst7g00106 1039 SMART ring_2 850 889 IPR001841 -
Spst7g00106 1039 Pfam Helicase conserved C-terminal domain 926 1014 IPR001650 -
Spst7g00106 1039 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 799 914 IPR013083 -
Spst7g00106 1039 SMART helicmild6 951 1034 IPR001650 -
Spst7g00106 1039 FunFam DNA repair protein RAD5B 457 693 - -
Spst7g00106 1039 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 704 1014 IPR027417 -
Spst7g00106 1039 Gene3D - 454 693 IPR038718 -
Spst7g00106 1039 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 920 1039 IPR001650 -
Spst7g00106 1039 MobiDBLite consensus disorder prediction 37 86 - -
Spst7g00106 1039 CDD SF2_C_SNF 906 1014 - -
Spst7g00106 1039 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 460 654 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g00106 Spst-Chr7 784449 789940 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g00106 141 1014 RAD5 or RAD16-like Gene Family AT5G43530 58.725 0.0 1071
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Spst7g00106 SNF2_N 3.9e-79 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g00106 K15505 - gmx:100806677 1662.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst7g00106 7 784449 789940 Spst7g00106 7 784449 789940 ECH