Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g00100 ATGGATTCCTTAGAAGACAGCGGCTGTTGGGATTTTCTGGATTACTCTTTCATCGATCAAGCGCCCCCTGATTTCCTTTGGCCCAATCCAAGTGTGAGCACTGAAATTGACATTCCAGGTGATGCTGTTACTTGTGAAGAGAACACCAAGAAGAGGGGGCGCACTGATTCATGCTGTAAGGTGGGATCAAAAGCATGCCGTGAGAAATTGCGGAGGGAGAGACTCAATGAAAGGTTCTGTGACCTAAGCTCTGTTTTGGAACCTGGGAGACCTGTGAGGACAGATAAACAATCTATACTCGATGATGCTATCAGAGTCTTGAGCCAACTTAAAACGGAAGCTCAGGAGCTCAAAACAACAAATGAAAAATTATTAGAGGAAATAAAATGTTTAAAGGCTGAGAAAAACGAACTTCGGGAAGAGAAACTTGTTCTGAAAGCAGATAAGGAGAGGATTGAGAAGCAGTTGAAATCCTTGCCCATTGCACCTGCAGGGTTTATGGCACCCCCTGTAGCTGCTGCTGCTGCATATCAAGCAGGGGTTAACAAGATGGCTGTTTATCCAAACTATGGCTACATCCCAATGTGGCAATATCTTCCTCAATCTGCCAGGGACACATCCCAAGATCATGAGCTTAGGCCTCCTGCAGCATAG 654 0.4541 MDSLEDSGCWDFLDYSFIDQAPPDFLWPNPSVSTEIDIPGDAVTCEENTKKRGRTDSCCKVGSKACREKLRRERLNERFCDLSSVLEPGRPVRTDKQSILDDAIRVLSQLKTEAQELKTTNEKLLEEIKCLKAEKNELREEKLVLKADKERIEKQLKSLPIAPAGFMAPPVAAAAAYQAGVNKMAVYPNYGYIPMWQYLPQSARDTSQDHELRPPAA 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g00100 217 Coils Coil 100 155 - -
Spst7g00100 217 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 65 137 IPR036638 GO:0046983
Spst7g00100 217 PANTHER BHLH TRANSCRIPTION FACTOR 7 217 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Spst7g00100 217 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 59 110 IPR011598 GO:0046983
Spst7g00100 217 FunFam Transcription factor bHLH104 62 143 - -
Spst7g00100 217 Pfam Helix-loop-helix DNA-binding domain 62 110 IPR011598 GO:0046983
Spst7g00100 217 Gene3D - 63 143 IPR036638 GO:0046983
Spst7g00100 217 CDD bHLH_AtILR3_like 64 139 - -
Spst7g00100 217 SMART finulus 65 116 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g00100 Spst-Chr7 747109 750676 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g00100 49 217 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G14410 67.647 2.75e-75 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst7g00100 HLH 3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g00100 - - gmx:100787583 364.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst7g00100 7 747109 750676 Spst7g00100 7 747109 750676 ECH