Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g00099 ATGAGACTGTTTTCTCTATCCAGGGAAGGTGAAGACCCATCTGTTACATCTGGGCCTAGAGGGCTAGAGGAAGCAGTTATTAGGTTAATCCCAGTGATTCATTATAAGCCAGAAGAAGGGGACACAGACTTTGGTGAAAGAAGCATTGATGATTGTGCAGTTTGCTTGAGTGAGTTTCAACGAGATGAGAAGCTGAGGGTTATACCAAACTGTGGCCATGTCTTTCACATTGATTGCATAGATGTTTGGCTTCAGAACAATACCCAATGCCCCCTTTGTAGAAGAATGGTGTCCTTGACAAGCCAAGTCCATGTTGACCAACTAAACCTTCCCACTCCAAGGCCTTCCCTTCAAGGTCAAAGCCAAAACATTGAAAACCATGCTAGTGATGAAGGTTTTGTTGTGATTGATTTGGATGGTGAACTTGATAGAGACCAAAACTTACAAGGAGGACAAGAGTTACCTACTGTTAGTGTTTCCTCACAAAGAAAGTTGGCGGAGCAGAAGAAAGCAAAGAAGCTTGATAAAGTGAACAGCTTGGGAGATGAATGTATTGACATTAGAGCCAAAGGTGAAAGGCTCTCGGTTCAAGCCATGAGAAGGTCTTTTTCCATGGACTCATCAATGGATAGAAAGTTTTATGGGGCAATTCAACTGGCTTTTCAACAACAACAACAAAATGGGCATGTCCATGAGATGAACAGAATTGAAGCTTGTGGTGGCAGTGATAGAGTCAAGAAATCATTCTTTTCTTTTGGTCATGGAAGCAGACCAAGAAGTGCTCTAGTAGTACCTGTTTATTTGGACCACTGA 813 0.4231 MRLFSLSREGEDPSVTSGPRGLEEAVIRLIPVIHYKPEEGDTDFGERSIDDCAVCLSEFQRDEKLRVIPNCGHVFHIDCIDVWLQNNTQCPLCRRMVSLTSQVHVDQLNLPTPRPSLQGQSQNIENHASDEGFVVIDLDGELDRDQNLQGGQELPTVSVSSQRKLAEQKKAKKLDKVNSLGDECIDIRAKGERLSVQAMRRSFSMDSSMDRKFYGAIQLAFQQQQQNGHVHEMNRIEACGGSDRVKKSFFSFGHGSRPRSALVVPVYLDH 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g00099 270 SUPERFAMILY RING/U-box 33 100 - -
Spst7g00099 270 ProSiteProfiles Zinc finger RING-type profile. 52 94 IPR001841 -
Spst7g00099 270 FunFam E3 ubiquitin-protein ligase ATL6 11 100 - -
Spst7g00099 270 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 99 IPR013083 -
Spst7g00099 270 PANTHER RING-H2 FINGER PROTEIN ATL16 14 266 IPR044600 GO:0016567|GO:0016740
Spst7g00099 270 CDD RING-H2_EL5-like 51 94 - -
Spst7g00099 270 SMART ring_2 52 93 IPR001841 -
Spst7g00099 270 Pfam Ring finger domain 50 94 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g00099 Spst-Chr7 744672 745484 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g00099 20 269 C3H Transcription Factor Family AT1G04360 39.716 1.73e-48 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g00099 - - gmx:100814827 364.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03106 1 39655147 39656076 Spst7g00099 7 744672 745484 PCT