Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g00091 ATGGTTAGAGCTCCTTGTTGTGAAAAGATGGGGTTGAAGAAGGGTCCTTGGACCCAAGAGGAAGATCAAATCCTCATATCATACATCCAAAAACATGGCCATGGAAACTGGCGTGCCCTCCCAAAGCTTGCGGGGCTGTTGAGGTGTGGAAAGAGTTGCAGACTAAGGTGGATTAACTACTTGAAACCAGACATCAAAAGAGGAAATTTCTCAAGTGAAGAAGAAGATGTTATCATCAAGATGCATGAGTTGCTCGGAAATAGGTGGTCAGCAATAGCAGCAAAACTACCCGGAAGAACGGACAATGAAATTAAGAATGTGTGGCACACTCACTTGAAGAAGAAGTTGCTGAGTTCAGATGCCAAAAGGGTTTCCAATCCAAAAATCAAACGATCCGATTCCAATTCCAGCTCCCTAACTCAGTCAGAACCCACATCATCATCAGCATGCACTTCTTCCAGTGATTTTTCATCATTCAGTGAAGGAACCAAGAACATGGACAGCACCACCATGATCAAGAGTGAAGATATCGAGTCTGAGGAGACAACAATGCCTCCAATTGATGATAGCTTTTGGTCAGAAGCAACAGTTGAATATGAAAGCTCCACCATGATGATGCCATCAAATTCTTGGACAATTTCAAATGAATTTGCACCCTCTCATTACCACCAATACCAATTTAATTCAGTTGAAACCTTCCAACAACACAGTGTTGGCTATAATGATTCAAACTTTGATGATGGCATGGATTTCTGGTATGACATATTCATCAGATCAGGAGAGTCAATAGAATTGCCAGAGTTCTGA 807 0.4188 MVRAPCCEKMGLKKGPWTQEEDQILISYIQKHGHGNWRALPKLAGLLRCGKSCRLRWINYLKPDIKRGNFSSEEEDVIIKMHELLGNRWSAIAAKLPGRTDNEIKNVWHTHLKKKLLSSDAKRVSNPKIKRSDSNSSSLTQSEPTSSSACTSSSDFSSFSEGTKNMDSTTMIKSEDIESEETTMPPIDDSFWSEATVEYESSTMMMPSNSWTISNEFAPSHYHQYQFNSVETFQQHSVGYNDSNFDDGMDFWYDIFIRSGESIELPEF 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g00091 268 CDD SANT 69 112 IPR001005 -
Spst7g00091 268 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Spst7g00091 268 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Spst7g00091 268 Gene3D - 13 66 - -
Spst7g00091 268 CDD SANT 16 61 IPR001005 -
Spst7g00091 268 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Spst7g00091 268 SMART sant 66 114 IPR001005 -
Spst7g00091 268 SMART sant 13 63 IPR001005 -
Spst7g00091 268 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Spst7g00091 268 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Spst7g00091 268 MobiDBLite consensus disorder prediction 119 189 - -
Spst7g00091 268 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 201 - -
Spst7g00091 268 Gene3D - 68 144 - -
Spst7g00091 268 FunFam MYB-related transcription factor 13 66 - -
Spst7g00091 268 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Spst7g00091 268 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Spst7g00091 268 MobiDBLite consensus disorder prediction 130 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g00091 Spst-Chr7 699785 701290 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g00091 1 268 MYB Transcription Factor Family AT2G31180 50.554 1.75e-79 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst7g00091 Myb_DNA-binding 9.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g00091 K09422 - gmx:100806975 447.588