Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g00088 ATGGAGATGAGGTATGCCTTCACAGGTTACAATTTGTTTCATGTGTGGGATAAAAGGTTAGGTAAAAGCAGGGATGAAACAAAGCTGGTTTGGATTTCTCATGGAAAGGAAAAGAGTCTAAAACTGGCTTCTGTTTCACACATCATCGCAGGACAGAGAACAGCTGTCTTTAGAAGATACTTGCGCCCTGAAAAAGATTATCTGTCATTTTCCCTTATTCATAAGAGGGGGGAACGATCACTTGATCTGATCTGCAAGGACCAAGCTGAGGTAGAGATATGGTTTTCAAGCCTAAAGGCATTAATTTCCACTGGAGAGCGTGTTCGGCGCGGAACAAGTGATTTAAGCAGTGAAAGTGGTGACTTTGTTGCTGGAACACTAGAGTTCGCATCAAACATTGCCCGTAACAGGTTTTCTTTTGAATCAGCATCCCATGAATCTACATCATCTTGGTCAAGATCAGATACAAATATGCCAATAAGGACAAGTATTGGAGATGGTTCTCGTGTTAGTATATCAAGTATTAGCCACTCAAGTAGTGTAGGATCAGGACTAGATGACATAGAATCTCTTGGTGATGTTTATATATGGGGAGAGGTTTGGGCAGATGGCAATTCATCTGATGGATTGGGGAGTCAAGCCACTTGTAAAACAGATGTGTTGAGTCCTAAGCCATTAGAATCTGACGTTGTTCTTGATGTTAATCAGATCGGGACTGGTGTACGTCACATTGCTTTAGTTACAAGGCAAGGAGAGGTTTTCACATGGGGAGAGGACTCTGGTGGAAGACTTGGCCACGGCTTTGAAAAAGATTTTGGTCGACCTCATCTTGTGGAGTCCCTGGCAATGTCCAACATGTCTTTTGTTGCATGTGGTGAATATCATTCATGTGCTGTGTCTCTATCAGGTGACCTGTTCACCTGGGGTGATGGTACACATGGTGCAGGACTTCTTGGTCATGGCAGTGATGTTAGCTACTGGATACCAAAGAGGGTCTGTGGCCCTTTAGAGGGACTTCAGGTTGTATCCGTAGCTTGTGGCTCATGGCATTCAGCATTAGCAACCTCCCAAGGGAAATTGTTTACCTTTGGTGATGGAAGATTTGGAGCATTGGGCCATGGGGATCGAGAGAGTGTATTATATCCAAAGGAGGTACAATTATTGAGTGGACACAAGGCTATTAAGGTTGCATGTGGAGTGTGGCATACAGCAGCTATTATAGAGATTATGGATTCTTCTGGTTCAACTGCTTCATCCAGGAAGATCTTCACATGGGGTGATGGTGATCAGTATCGTTTGGGTCATGTTAACAAGGAAAATTACCTTCAACCAACTTGTGTAGCTGCCCTTGCTGATTATGGTTTTAATCAGATTGCATGTGGGTACACCATGACTATTGCACTCACTGTATCTGGTCATGTTTTCACAATGGGAGGCACAGCATATGGTCAACTAGGAAACCCAACTTCTGATGGAAAAGTGCCAATTCTAGTTCGAGATAAGTTAGTAGGTGAGTTCGTGGAGGAAATAGCATGCGGAGCACATCATGTTGCTGTGTTGACTTCACGAAGTGAACTATATACTTGGGGAAGAGGTGCAAATGGAAGACTAGGACATGGAGACACAGATGACCAGAAAACTCCAACATTGGTGGAAGCCTTGAAAGACAGACATGTTAAGAATATCTCATGCGGCTCTACCTTTACATCTTGTATATGCCTGCATAAGTGGATCTCTGGAGTTGACCAATCTGCTTGCTCTGATTGTCGACAACCATTTGGTTTTACCCGAAAAAGGCATAATTGCTATAATTGTGGATTGGTGTTTTGTCATCCTTGTAGTTCAAAAAAGGCTTCCAAAGCAGCATTGGCTCCAACACCTAGCAAACCACATCGCGTGTGTGATGCTTGTTATGCTAAGTTAAAAGCTTCTGATAGTGCTTCCAATTTAAATAAAGAATTTACTCGTCCTTCTATTTCCATATATGGAAAGGAAAAATTTGACAGGGGAGAGGTTAAGTCTTCAAGAGTTATCTTACCTCCCATCACAGAACCAGTAAAATACCTTGAGATTAGGAATAGTAAGCCTGGAAATATAGATGAAACTTCTTCCATAGTCCGAGCGGCTCAAGTTCCTATGAGTTTGCAATTGAAAGATATTGCATTTCCAATTTCGCTGAGTTCGGCACAGAATATTTTCAAGCCTATTTTACATTCTACTCAAACATCAACTCCAAAACCTATCACACCATATCCTAAAAGGCCACCAAGCCCACCTCGTTCTACCTCCCCTGGATTTTCAAGAACCCTTATTGATAATTTAAGGAAGAAAAGTGATCATATGAATCAAGAAGTCTTTAAATTGCAAACGAAAAATAAAAGTTTGAAGCAGAAGAGTGACAGACAAGAAATGAAGATTCAGGAGCTTCAGAAATATATTGAAGAGGAATCTTCTAAGCTTAGAGAATCAAAGAAATTTATTAAGTCCATGACAGATAAGTTGAGGGAAGTGACTGAGACATTGCCACCTGACAATGAGACTTTGAGAACCATGCATGCTCAAGCCGAAGAATTTCTTCGTGAAGAAAAACATTTTGAACCTTCTTCCTCCACACCGAGAGTCAAGTCACCTGCCTCAGATAATAACTCTTCAAAGCTGCAAGAGCGAAGAATGAAAGGAAATGATGATGCTTCTGGGGTTGTTTCACCCATGGATGGAGAAAATATTGAAGAGATCAGAAACTCAACTGTAACTAGTCCAGCAATGACTCCAACTATCTCAAGAAAAGTAACAAGATTAAGTGACAATAGTATACAAATGACAGAAGGAGAAAGATCAATCATTGAACAATTTGAGCCAGGTGTTTTTGTCACACTCGTAGAACTACCTTGTGGTTACAAAGTTTTCAAACGAATTAGATTCAGTAAACGGAAATTCAATGAGCAGCAAGCAGAAGAGTGGTGGAACCAAAACAAAGAAAAGGTATATATTACATATAGTCCACCACCCACAAAAAATGCAATAACTGGATCATCCATTCCCTCTCCAAATCCTGAAGAGAATACTGAATCATTACCTTCTTCCTAA 3087 0.4104 MEMRYAFTGYNLFHVWDKRLGKSRDETKLVWISHGKEKSLKLASVSHIIAGQRTAVFRRYLRPEKDYLSFSLIHKRGERSLDLICKDQAEVEIWFSSLKALISTGERVRRGTSDLSSESGDFVAGTLEFASNIARNRFSFESASHESTSSWSRSDTNMPIRTSIGDGSRVSISSISHSSSVGSGLDDIESLGDVYIWGEVWADGNSSDGLGSQATCKTDVLSPKPLESDVVLDVNQIGTGVRHIALVTRQGEVFTWGEDSGGRLGHGFEKDFGRPHLVESLAMSNMSFVACGEYHSCAVSLSGDLFTWGDGTHGAGLLGHGSDVSYWIPKRVCGPLEGLQVVSVACGSWHSALATSQGKLFTFGDGRFGALGHGDRESVLYPKEVQLLSGHKAIKVACGVWHTAAIIEIMDSSGSTASSRKIFTWGDGDQYRLGHVNKENYLQPTCVAALADYGFNQIACGYTMTIALTVSGHVFTMGGTAYGQLGNPTSDGKVPILVRDKLVGEFVEEIACGAHHVAVLTSRSELYTWGRGANGRLGHGDTDDQKTPTLVEALKDRHVKNISCGSTFTSCICLHKWISGVDQSACSDCRQPFGFTRKRHNCYNCGLVFCHPCSSKKASKAALAPTPSKPHRVCDACYAKLKASDSASNLNKEFTRPSISIYGKEKFDRGEVKSSRVILPPITEPVKYLEIRNSKPGNIDETSSIVRAAQVPMSLQLKDIAFPISLSSAQNIFKPILHSTQTSTPKPITPYPKRPPSPPRSTSPGFSRTLIDNLRKKSDHMNQEVFKLQTKNKSLKQKSDRQEMKIQELQKYIEEESSKLRESKKFIKSMTDKLREVTETLPPDNETLRTMHAQAEEFLREEKHFEPSSSTPRVKSPASDNNSSKLQERRMKGNDDASGVVSPMDGENIEEIRNSTVTSPAMTPTISRKVTRLSDNSIQMTEGERSIIEQFEPGVFVTLVELPCGYKVFKRIRFSKRKFNEQQAEEWWNQNKEKVYITYSPPPTKNAITGSSIPSPNPEENTESLPSS 1028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g00088 1028 MobiDBLite consensus disorder prediction 861 904 - -
Spst7g00088 1028 Coils Coil 771 812 - -
Spst7g00088 1028 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 36 825 - -
Spst7g00088 1028 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 420 471 IPR000408 -
Spst7g00088 1028 PRINTS Chromosome condensation regulator RCC1 signature 461 479 IPR000408 -
Spst7g00088 1028 PRINTS Chromosome condensation regulator RCC1 signature 303 319 IPR000408 -
Spst7g00088 1028 PRINTS Chromosome condensation regulator RCC1 signature 360 374 IPR000408 -
Spst7g00088 1028 PRINTS Chromosome condensation regulator RCC1 signature 519 540 IPR000408 -
Spst7g00088 1028 PRINTS Chromosome condensation regulator RCC1 signature 253 269 IPR000408 -
Spst7g00088 1028 PRINTS Chromosome condensation regulator RCC1 signature 344 360 IPR000408 -
Spst7g00088 1028 SUPERFAMILY PH domain-like 24 102 - -
Spst7g00088 1028 Pfam Transcription factor regulating root and shoot growth via Pin3 945 999 IPR013591 -
Spst7g00088 1028 Gene3D - 127 413 IPR009091 -
Spst7g00088 1028 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 472 523 IPR000408 -
Spst7g00088 1028 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 251 302 IPR000408 -
Spst7g00088 1028 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 524 575 IPR000408 -
Spst7g00088 1028 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 303 357 IPR000408 -
Spst7g00088 1028 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 358 409 IPR000408 -
Spst7g00088 1028 MobiDBLite consensus disorder prediction 1000 1028 - -
Spst7g00088 1028 Gene3D - 414 580 IPR009091 -
Spst7g00088 1028 Pfam FYVE zinc finger 576 642 IPR000306 GO:0046872
Spst7g00088 1028 MobiDBLite consensus disorder prediction 737 767 - -
Spst7g00088 1028 FunFam PH, RCC1 and FYVE domains-containing protein 1 163 411 - -
Spst7g00088 1028 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 396 406 IPR000408 -
Spst7g00088 1028 MobiDBLite consensus disorder prediction 748 762 - -
Spst7g00088 1028 Gene3D - 7 110 IPR011993 -
Spst7g00088 1028 Pfam Regulator of chromosome condensation (RCC1) repeat 251 299 IPR000408 -
Spst7g00088 1028 Pfam Regulator of chromosome condensation (RCC1) repeat 422 468 IPR000408 -
Spst7g00088 1028 Pfam Regulator of chromosome condensation (RCC1) repeat 358 406 IPR000408 -
Spst7g00088 1028 Pfam Regulator of chromosome condensation (RCC1) repeat 471 520 IPR000408 -
Spst7g00088 1028 Pfam Regulator of chromosome condensation (RCC1) repeat 525 572 IPR000408 -
Spst7g00088 1028 Pfam Regulator of chromosome condensation (RCC1) repeat 302 353 IPR000408 -
Spst7g00088 1028 MobiDBLite consensus disorder prediction 870 884 - -
Spst7g00088 1028 ProSiteProfiles BRX domain profile. 945 1000 IPR013591 -
Spst7g00088 1028 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 581 652 IPR013083 -
Spst7g00088 1028 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 580 642 IPR017455 -
Spst7g00088 1028 SMART fyve_4 575 643 IPR000306 GO:0046872
Spst7g00088 1028 SUPERFAMILY RCC1/BLIP-II 192 577 IPR009091 -
Spst7g00088 1028 SUPERFAMILY FYVE/PHD zinc finger 576 646 IPR011011 -
Spst7g00088 1028 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 237 247 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g00088 Spst-Chr7 682543 689157 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g00088 921 999 Major Intrinsic Protein MIP AT1G31880 36.709 1.01e-09 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g00088 - - gmx:100812689 1559.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst7g00088 7 682543 689157 Spst7g00088 7 682543 689157 ECH