Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g00012 ATGAATGGGGTCATCACTAACCCTGAGAAGGGTTCCTCAGTTCACATGCTCCTGCCTCCAAAGGGTGGGTGGGTGGGTGTGTCCCACGTCTGTCCTCCAACTGGGGGGACATGTTCCTTTAAAGCCGCTAACACTGCCACAACAATTCTGAAATTCATAGATATTATATTAAGATTGTCATCACAGGGAAAGATGGAAAGCAGAGTGGTGTTTGAGACTCATCTCAACCTCAAGGCAACAGAACTTAGATTGGGATTGCCAGGGACACAGGAAAACGAAGACAAAACCGCCCATTCATATGCTGTTGTTAGAAACAACAAAAGGCCAGAACGCGAAACCTCTGAAGACTCTGTTTCCATTTCAAAGGCCTCACTTGACCAACAACATGTGCACGCTGTTGCAGCCCCTCAGCTCAAGGCAGAGATAGTGGGGTGGCCACCAATCAGATCCTACAGGAAGAACAGTGTGCAGGAGGGCGAGGGGGATGGAATCTATGTGAAAGTGAGCATGGATGGAGCACCTTACCTCAGAAAGATTGACTTGAAAGTCTACAGGGGCTATCCAGAACTACTCAAAGCTTTAGAAACCATGTTCAAGTTGACCATAGGTGAGTACTCTGAAAGAGAGGGTTATAAGGGATCTGAATATGCTCCTACATATGAAGACAAGGATGGTGACTGGATGCTAGTTGGAGATGTTCCATGGGACATGTTTATGACTTGTTGCAAAAGGCTAAGAATCATGAAAGGCTCCGAAGCAAGAGGGCTGGGTTGTGGTGTATGA 783 0.4687 MNGVITNPEKGSSVHMLLPPKGGWVGVSHVCPPTGGTCSFKAANTATTILKFIDIILRLSSQGKMESRVVFETHLNLKATELRLGLPGTQENEDKTAHSYAVVRNNKRPERETSEDSVSISKASLDQQHVHAVAAPQLKAEIVGWPPIRSYRKNSVQEGEGDGIYVKVSMDGAPYLRKIDLKVYRGYPELLKALETMFKLTIGEYSEREGYKGSEYAPTYEDKDGDWMLVGDVPWDMFMTCCKRLRIMKGSEARGLGCGV 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g00012 260 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 75 254 IPR003311 GO:0005634|GO:0006355
Spst7g00012 260 Pfam AUX/IAA family 80 257 IPR033389 -
Spst7g00012 260 SUPERFAMILY CAD & PB1 domains 153 249 - -
Spst7g00012 260 ProSiteProfiles PB1 domain profile. 163 250 IPR000270 GO:0005515
Spst7g00012 260 FunFam Auxin-responsive protein 158 260 - -
Spst7g00012 260 Gene3D - 158 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g00012 Spst-Chr7 209188 210807 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g00012 166 256 B3 DNA Binding Superfamily AT2G46530 38.462 1.85e-12 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Spst7g00012 AUX_IAA 3.3e-52 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g00012 K14484 - gmx:100800212 321.242