Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g00005 ATGGAAACAGCGCTCACTTGCTTCTTCTGTGGCAGAGTCCCACACAGACCCAAATTCGCCTCTGCTGCGACTGCAAGTGAGCACTTCCCTTCTAACAATGCCTCCCCACACCTCCGTTTTTCCTTCCCCCCTTCGTTTCGACCATTTCGCCTCATTCCAAACGCCGCTAACACCACCGAACCTAAGGTCTCCACCAACGCCAAAAGTAGAAGAAGGAGAAGAAGAAGTTCTGAGACTATGGGGGTGGTTGTGGAGGAGGCTGTTGGTGTCCATCAGAACGGAGACCCAATTGGGAAGAAGGATCTCGGCAAGAGTGTCATGAGGTGGATTCGTGACAGCATGAGGGCCATGGCGTCCGATTTAGCTGCCGCCGAGATGCAGGGAGAGATGGACTTGTGGGAGCGCATGGGACCCGGTCTCACCTTTATTATGCAGGCGCAGCCCTATCTGAATGCGGTTCCTATGCCCATTGGCCTTGAAGGTGTTTGCTTGAAGGCCTGCACGCACTACTCCACTCTTTTCGACCATTTTCAGAGGGAGCTTCGCGCTGTTCTCCAAGACATGCAGAACGACAAGTACATTCAGGACTGGAGGGACACCAAGTCTTGGAAACTGCTTAAGCAGCTCGCCAATTCAGCTCAGCACAGAGCAGTTGTGAGAAAAATAACACAACCCAAGAGTGTCCAAGGCGTTTTAGGAATGGACTTGGGAAAGGTCAAAGCAATGCAGCACAGGATTGATGAATTCACCAATCACATGTCAGAACTACTCCGTATTGAAAGGGATGCTGAATTGGAGTTTACACAGGAGGAATTGGATGCGGTTCCTAAACCAGATGATACTTCTGATTCTGCAAAACCTATTGATTTCTTGGTTAGTCATGGCCAGCCTCAACAAGAACTTTGCGACACCATTTGTAATTTAAATGCCATCAGTACCTCTACAGGGCTGGGGGGAATGCATTTGGTATTATTCAAGGTTGAAGGGAACCACCGGTTACCACCTACTGCTCTTTCACCTGGAGACATGGTTTGTGTGAGAACGTATGACAGCAGGGGTGCAATTACAACTTCTTGCATACAAGGATTTGTAAACAGTTTTGGAGATGATGGCTACAGTATTACAATTGCTTTAGAGTCACGTCATGGTGATCCTACATTCTCTAAACTATTTGGGAAGAACGTGCGCATTGATCGTATTCAAGGACTGGCTGATACACTTACCTATGAGCGCAACTGTGAAGCTTTAATGCTGCTTCAGAAAAATGGTTTACGTAAGAAGAATCCTTCAATTTCTGTTGTTGCTACACTGTTTGGAGATGGGGAAGATGTTGCATGGCTAGAGAAGAATCATTTGGCTGATTGGGCAGAAGAAAAAACAGATCGAATTTTAGGAAATGAAACCTTTGATGATTCTCAGTTGAGAGCAATTGCACTGGGTTTGAATAAAAAGAGGCCTGTATTGGTTATCCAAGGCCCTCCTGGTACAGGCAAGACTGGTTTGCTCAAGCAACTTATAGCTTCTGCTGTTCAGCAAGGTGAAAGGGTTCTTGTTACTGCACCTACCAATGCAGCTGTAGATAACATGGTTGAAAAGCTTTCAAATGTTGGGTTAAATATTGTGCGGGTTGGAAATCCAGCTCGTATATCAAAAACAGTGGGATCAAAGTCTTTGGAAGAAATTGTAAATGCTAAGCTTGCACGTTTTCGAGAAGAGTATGAGAGGAAGAAGTCGGATCTAAGAAAAGATCTAAGACATTGTTTAAGAGATGATTCACTAGCTGCAGGCATACGCCAACTTCTGAAACAATTGGGAAGGTCCCTAAAGAAAAAGGAAAAACAGACAGTAAATGAAGTTCTATCTAGTGCTCAGGTTGTGCTTGCCACTAATACTGGAGCAGCTGACCCTTTGATTCGAAGGCTGGATACTTTTGACTTGGTTGTCATAGATGAAGCTGGACAGGCAATTGAACCCTCTTGTTGGATTCCTATATTGCAAGGAAAGCGGTGTATTCTTGCTGGCGATCAATCCCAACTTGCTCCTGTCATATTATCTAGAAAGGCCTTGGAAGGTGGTCTAGGAATATCTCTATTGGAAAAAGCTGCAACTTTGCATGAAGGGATTCTCACCACTAGGTTAACAACACAATACCGTATGAATGATGCTATTTCTAGTTGGGCTTCAAAGGAGATGTACGGAGGATTGTTGACGTCCTCTGAGACTGTATTTTCTCATCTTCTTGTAGACTCTCCTTTTGTTAAGCCTACTTGGATAACACAGTGCCCACTACTATTGTTAGATACTAGAATGCCATATGGAAGTCTGTCAGTTGGTTGCGAAGAGCATCTAGACCCAGCTGGAACAGGCTCACTTTATAATGAAGGAGAAGCTGAGATAGTTTTGCAGCATGTCTTTTCCTTAATTTATGCTGGTGTTAGCCCAGCTGCTATTGCAGTGCAATCCCCCTATGTTGCTCAAGTACAACTTTTGAGGGACAAGCTTGATGAATTTCCTGAAGCTGCAGGTACAGAGGTTGCAACCATTGACAGTTTTCAGGGTCGTGAAGCTGATGCAGTAATTTTATCTATGGTACGGTCAAACACATTGGGAGCTGTTGGATTCCTCGGGGATAGCAGAAGAATCAATGTTGCCATCACAAGAGCACGCAAACATTTAGCTTTGGTCTGTGACAGCTCGACTATATGCCACAATACCTTCTTGTCAAGACTTCTTCGTCATATTAGACACTTTGGTAGGGTGAAACATGCAGAACCAGGTAGTTTTGGAGGATTCGGACTTGGGATGAATCCGATATTACCTTCCATTAATTAG 2832 0.4477 METALTCFFCGRVPHRPKFASAATASEHFPSNNASPHLRFSFPPSFRPFRLIPNAANTTEPKVSTNAKSRRRRRRSSETMGVVVEEAVGVHQNGDPIGKKDLGKSVMRWIRDSMRAMASDLAAAEMQGEMDLWERMGPGLTFIMQAQPYLNAVPMPIGLEGVCLKACTHYSTLFDHFQRELRAVLQDMQNDKYIQDWRDTKSWKLLKQLANSAQHRAVVRKITQPKSVQGVLGMDLGKVKAMQHRIDEFTNHMSELLRIERDAELEFTQEELDAVPKPDDTSDSAKPIDFLVSHGQPQQELCDTICNLNAISTSTGLGGMHLVLFKVEGNHRLPPTALSPGDMVCVRTYDSRGAITTSCIQGFVNSFGDDGYSITIALESRHGDPTFSKLFGKNVRIDRIQGLADTLTYERNCEALMLLQKNGLRKKNPSISVVATLFGDGEDVAWLEKNHLADWAEEKTDRILGNETFDDSQLRAIALGLNKKRPVLVIQGPPGTGKTGLLKQLIASAVQQGERVLVTAPTNAAVDNMVEKLSNVGLNIVRVGNPARISKTVGSKSLEEIVNAKLARFREEYERKKSDLRKDLRHCLRDDSLAAGIRQLLKQLGRSLKKKEKQTVNEVLSSAQVVLATNTGAADPLIRRLDTFDLVVIDEAGQAIEPSCWIPILQGKRCILAGDQSQLAPVILSRKALEGGLGISLLEKAATLHEGILTTRLTTQYRMNDAISSWASKEMYGGLLTSSETVFSHLLVDSPFVKPTWITQCPLLLLDTRMPYGSLSVGCEEHLDPAGTGSLYNEGEAEIVLQHVFSLIYAGVSPAAIAVQSPYVAQVQLLRDKLDEFPEAAGTEVATIDSFQGREADAVILSMVRSNTLGAVGFLGDSRRINVAITRARKHLALVCDSSTICHNTFLSRLLRHIRHFGRVKHAEPGSFGGFGLGMNPILPSIN 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g00005 943 Coils Coil 563 590 - -
Spst7g00005 943 FunFam DNA-binding protein SMUBP-2 isoform X2 272 403 - -
Spst7g00005 943 MobiDBLite consensus disorder prediction 56 79 - -
Spst7g00005 943 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 467 905 IPR027417 -
Spst7g00005 943 Gene3D - 253 701 IPR027417 -
Spst7g00005 943 Gene3D - 717 925 IPR027417 -
Spst7g00005 943 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 127 926 - -
Spst7g00005 943 Gene3D - 272 403 - -
Spst7g00005 943 CDD DEXXQc_SMUBP2 469 718 - -
Spst7g00005 943 SMART AAA_5 484 699 IPR003593 GO:0016887
Spst7g00005 943 SMART ultradead3 465 717 IPR014001 -
Spst7g00005 943 Pfam AAA domain 695 898 IPR041679 -
Spst7g00005 943 Pfam AAA domain 469 685 IPR041677 GO:0004386
Spst7g00005 943 CDD SF1_C_Upf1 719 915 IPR047187 -
Spst7g00005 943 FunFam DNA helicase A 717 925 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g00005 Spst-Chr7 159716 169455 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst7g00005 463 658 Core DNA Replication Machinery Family AT1G08840 26.263 1.57e-07 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g00005 - - gmx:100799347 1663.66