Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g02790 ATGAGGTTGGGTATTTCATCCACTCAGGGGTCAATTTGCAGCCACTTTCCTCCAGATGTAGTATTTGTTGTACAAGGAAAACCTATTCCGGCTCACAGAGTCGTATTAAGTGCAAGGTCACCATTTTTCAAGAAAAAGTTTACAACTGATTGGAAGGATCGCAGTGAAGTTAGATTCTCAAGGGAAAGGTTATCATATCCTGCACTTTATAGCCTTGTACACTTCTTTTATTCAGACAGATTAGAGATTGCTGTTAATGACATGGAGGATCTTGTGAGAATCTGCAAAGTATGCGGATGTGAATCACTGCATAAAGTTCTTGAGAAAGAAGTAATTCATCAAAAATATGCTGACTATAAAGCATTGAGAAATGTAGACAATTCTCAGAAACGGTATATTTTACAAGGTCTATCCCTTCCCGAAGAAGACAGGCTTCCTGCTGGCTTGCATCGAATCCTTAAAACTGCCCTTTCATATTCAACCGATGAGACTGGTCAAGAAGATGAAATTGATAAATTGGTATCTAGGATGGGTGCCATGCAGATGGCCAAATCTCTGGATGATCTTGCTGATGTTTGTGTAAAAGTTGATAGAAGTATTTTCCGCTGTCACCAAGTTATTCTAGCATCTAGGTCAGAATATTTTAAAGCAAGATTATCACATATGAAGGACTTCCATGAGGGGAAAGAGGAGTTATCTGTTGACATTCTTCCTTGTCTTGAAGAACATGACTTAAGCATGGAAGCTTTTGAGAAAATGATTGAATATATGTACACTGAACGTTTGCAAGATATAAATCCAGATCAGGCTGAGGAAATGTTGGATGTTGCTTCTAGATACTTATTGTTTCCTCTCAAGCGTGTAGTGGCCGATGTCTTGTTGCCACACTTGGAAAGGGTGTCACCAGAAGAACTTTGCCATTGGTTAATACTAGCAGACATGTATGGGGTTTTCAAGATTCGGGAGTATTGTCTGGACACCATTGCTTGTAATTTTGAAACTTTTGCTGACACCAAAGAATTCCGGGCAATGTTGTTGACTTTGCCTCCACCATCTGGAGACTCGTGCCTTCGAACCACTGTCCCCAGCATTCCTGGATCTTCTCTTAATACTGATCAAGGAAATCTTCTTGATGATTTACGTGAGAAATGGCTTGAAATTGAAGCGGCTGAGCTTGATAAGAGAGATGAGAGTGCTTTGCAATTTGACAAGCGTCTAGAGATGCTTATGCTTGTTGCGGAGCAAGAAGAATCATCAGACAATGCTAATGCTGTTTCAGATGACACTCTTGCATTTCTTCCCATTCACCACTCTGATCTAAAAGAAAGTTCTTCAAGAAATATCTACAAGAGGCATGACCGACTGGGGAAAGGAAGAAAAGAGTCCAAGATCACGGAGGTTTCTACGAGTGTTTTAGCTAGAACCAAGGTTAAGGAGTTTGAGGAGTTTCGTCAAGTCAATAAGGACATGAAGACTCTGGTATAG 1485 0.4034 MRLGISSTQGSICSHFPPDVVFVVQGKPIPAHRVVLSARSPFFKKKFTTDWKDRSEVRFSRERLSYPALYSLVHFFYSDRLEIAVNDMEDLVRICKVCGCESLHKVLEKEVIHQKYADYKALRNVDNSQKRYILQGLSLPEEDRLPAGLHRILKTALSYSTDETGQEDEIDKLVSRMGAMQMAKSLDDLADVCVKVDRSIFRCHQVILASRSEYFKARLSHMKDFHEGKEELSVDILPCLEEHDLSMEAFEKMIEYMYTERLQDINPDQAEEMLDVASRYLLFPLKRVVADVLLPHLERVSPEELCHWLILADMYGVFKIREYCLDTIACNFETFADTKEFRAMLLTLPPPSGDSCLRTTVPSIPGSSLNTDQGNLLDDLREKWLEIEAAELDKRDESALQFDKRLEMLMLVAEQEESSDNANAVSDDTLAFLPIHHSDLKESSSRNIYKRHDRLGKGRKESKITEVSTSVLARTKVKEFEEFRQVNKDMKTLV 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g02790 494 SMART BTB_4 190 297 IPR000210 GO:0005515
Spst6g02790 494 SMART BTB_4 18 115 IPR000210 GO:0005515
Spst6g02790 494 ProSiteProfiles BTB domain profile. 18 85 IPR000210 GO:0005515
Spst6g02790 494 PANTHER ANKYRIN REPEAT AND BTB/POZ DOMAIN-CONTAINING PROTEIN 1 15 413 IPR044515 -
Spst6g02790 494 SUPERFAMILY POZ domain 182 296 IPR011333 -
Spst6g02790 494 ProSiteProfiles BTB domain profile. 190 266 IPR000210 GO:0005515
Spst6g02790 494 FunFam BTB/POZ domain-containing protein 12 134 - -
Spst6g02790 494 Pfam BTB/POZ domain 187 292 IPR000210 GO:0005515
Spst6g02790 494 Pfam BTB/POZ domain 17 114 IPR000210 GO:0005515
Spst6g02790 494 CDD BTB_POZ_ZBTB_KLHL-like 189 280 - -
Spst6g02790 494 Gene3D Potassium Channel Kv1.1; Chain A 164 329 IPR011333 -
Spst6g02790 494 Gene3D Potassium Channel Kv1.1; Chain A 9 133 IPR011333 -
Spst6g02790 494 FunFam Ankyrin repeat and BTB/POZ domain-containing protein 1 171 299 - -
Spst6g02790 494 CDD BACK 301 344 - -
Spst6g02790 494 SUPERFAMILY POZ domain 13 110 IPR011333 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Spst6g02790 BTB 5.1e-16 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g02790 K10520 - gmx:100812009 776.933