Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g02761 ATGAAGAGACTCAATAACTCAGACTCTACGGCTACTTCACTTGCCATGTGCCCATCAAAAGGTTTGAATGGGAGGAAGGAAACTCAGGGTTACGGTGAAGAGTTTCAGGCAATGTTAGATAGACTAGAACAAGAAGACAGTAACGAAGATTCTAGCTTAGTGTTGGAGAAGAAAAGGAGGCTGAGTTTTGACCAGGTTAAAGCCTTAGAGAGAAGCTTTGAGTTAGACAACAAGCTAGAGCCAGAGCGCAAGTCAAAGTTAGCTGAGGAACTAGGTCTTCAACAAAGACAGGTTGCTATTTGGTTCCAAAATCGTCGAGCTCGTTGGAAAACTAAGCAATTGGAGAGAGACTATGGCATTCTCAAGTCCAATTATGACGTTCTAAAGGTTGAGTACAATAATCTTGAGCAAGATAATGAGGCTCTAACTCTTCAGGTTAGAGAATTGAAAGGAAAGTTGTTAAGAGGTAAAGCTGAAAGCAATGCGTCAACGAAAGAAGAATCTCCCATTTCAGAGGTTAGAGATAGAGGAGCATCAGAAAGCAATTCAAATAGTGTGGTTAAGGAAGAAAGCAACGTTGATTCTCCTTTTTGTGTGAATGGATATTTGCCCAGTTCAAGCTCAGTGATAAACTGGCTTCAAGATTCTGATTCAAGAGGGGCTCCTGAGAAAATGTTTCAGACTCAGTTTATGAGAATGGAGGAACAGAATTTCTTTGGCATCAATGACTTCTGTTTCTTTTCAGTTGATCAATCCCCTACCCTGTAA 768 0.4076 MKRLNNSDSTATSLAMCPSKGLNGRKETQGYGEEFQAMLDRLEQEDSNEDSSLVLEKKRRLSFDQVKALERSFELDNKLEPERKSKLAEELGLQQRQVAIWFQNRRARWKTKQLERDYGILKSNYDVLKVEYNNLEQDNEALTLQVRELKGKLLRGKAESNASTKEESPISEVRDRGASESNSNSVVKEESNVDSPFCVNGYLPSSSSVINWLQDSDSRGAPEKMFQTQFMRMEEQNFFGINDFCFFSVDQSPTL 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g02761 255 PRINTS Lambda-repressor HTH signature 83 92 IPR000047 GO:0003677
Spst6g02761 255 PRINTS Lambda-repressor HTH signature 92 108 IPR000047 GO:0003677
Spst6g02761 255 SMART HOX_1 55 116 IPR001356 GO:0003677
Spst6g02761 255 MobiDBLite consensus disorder prediction 1 17 - -
Spst6g02761 255 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 43 190 IPR045224 GO:0003700
Spst6g02761 255 Pfam Homeodomain 57 110 IPR001356 GO:0003677
Spst6g02761 255 ProSiteProfiles 'Homeobox' domain profile. 52 112 IPR001356 GO:0003677
Spst6g02761 255 Pfam Homeobox associated leucine zipper 112 153 IPR003106 GO:0006355|GO:0043565
Spst6g02761 255 MobiDBLite consensus disorder prediction 157 188 - -
Spst6g02761 255 Coils Coil 118 152 - -
Spst6g02761 255 FunFam homeobox-leucine zipper protein ATHB-6-like 60 106 - -
Spst6g02761 255 MobiDBLite consensus disorder prediction 157 174 - -
Spst6g02761 255 SUPERFAMILY Homeodomain-like 57 124 IPR009057 -
Spst6g02761 255 CDD homeodomain 57 113 IPR001356 GO:0003677
Spst6g02761 255 ProSitePatterns 'Homeobox' domain signature. 87 110 IPR017970 GO:0000981|GO:0006355
Spst6g02761 255 Gene3D - 49 117 - -
Spst6g02761 255 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g02761 Spst-Chr6 103976830 103978186 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g02761 1 153 Homeobox Transcription Factor Family AT2G22430 54.140 1.07e-49 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Spst6g02761 Homeodomain 7.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g02761 K09338 - qsa:O6P43_015335 285.419