Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g02722 ATGTTGAAGAGTGTAATTGTCGATGAGCATGGGATAAGTGTTCTTGAAGAAGTTTATGAAAGAATAATCACACATGTATTAAACTTGGAAGAGTTTATGAAACAATGCATATTGACAGTGATGAGTAGCGTGACTAGTGGAGATGAAAATAGGAAAATATCCAGAGGCCGTCGGTCGTCATCATTGGACGAAGAAGCTGGAGTCGGAGATAACATGGGAGAAGTCCCTCTAAAGAAAGGTCCTTGGACTGCAGCAGAGGATGCAATTTTGTTAGAATATGTCAATAAGCATGGACAAGGCAATTGGAATGCAGTCCAAAAGTATTCAGGACTTGCCCGTTGTGGGAAAAGCTGCCGTCTGCGGTGGGCAAATCACTTGAGACCAGATCTGAAAAAAGGTGCAATTACTGAAGAGGAAGAGAACAGAATCCTTGAGCTTCATGCAAAAATGGGGAACAAATGGGCTCGGATGGCTGCAGAGTTGCCTGGGCGTACTGATAATGAAATCAAGAATTATTGGAATACAAGAGTCAAAAGAATGCAACGGGCTGGCTTACCAATCTACCCTCCTGAGTTATGTCAGCGGTTACTTAATGGAAATCAAGAAAGTCAAAATGTTGGTCCTTTGACTATTGAAGCCTCCCAGCAGGATGACCTCTCACAAATGGACAATTTTGATATACCAAATGAGGATTTCAAAACTTTCAAATTTCTTCATGATCCATCATTAGAACCATCAATTTTTGATATGCCGGAAAGCAACTTGTTTGAACAAAGTTTGGACCCGTCTCATAGTTACGACTACTTGTTCCAATCAATATATCATTCAAAACGTCCCCGGAAGTCAGAGATGATATACAATAGTTTTGGTAGTTGTACAAGTAATGTCCCACTATTTGATCAGTATGACAATTATAGTACTGAGAAAATTTATGACTATCCTAGGTTTTCTCCTCCTTTCGATCCTGTTCTTAACACCAGCAATCAGTTTCATGGTGATAACATAAACGGCAGCCATGCCATGTTAAATGGCAACATCTCTTCTTCTGTGCCCGAATTTGGGGCTATGAAGATGGAGCTCCCTTCACTCCAATATACAGAAACTCAACATGGTAGTTGGGGAATGTCTGCATCCTCACTTCCTAGGCTTGATTCTGTAGATACATTGATTCAGTCTCCTCCAATTGAGTCTATTCCATCAGATCTCATTTCTCCACAAAGCAGTGGTTTGCTTGAAGAAATAGTCTATAACTCGAAGATGTTGAGAGACTCAAACAATGATTTATTTTGTCCAGATATAACTGGTACTACCAACGAAGCAGCAGGGAGTTCAACCTTGTATCATCCCTTTAAGACAGAATGGGATGAGCAAGGGGAGCCAAACTCCCCCTTGGGTCAATCAGCTGTTTCAGTTCTGACTGACTATACTCCTATAAGCTCAGTAGATGGGTCCCAGTCAATTGAAACAACTCAAGATCACGATGATAAGCTCGAAGCGCTCACCCAGATCCCAAATAGTTACATGAAGAAAGAAAATTTGGAACAGATTGATTTTTCGCAGCGCCCTGATGCTTTATTTGACTTATCTTGGTTTGGGAATGATACTGAATATGGAATTAATCAATTTGATCTAAAAGACGCCCTAACTGCACTTATTGTTGAAGAAAGCAAGGGTGACCTTGGTGAAGATGACAAGGGTAACCTTGGTGAAGATGGCAAGGGCAATCAGTAG 1731 0.409 MLKSVIVDEHGISVLEEVYERIITHVLNLEEFMKQCILTVMSSVTSGDENRKISRGRRSSSLDEEAGVGDNMGEVPLKKGPWTAAEDAILLEYVNKHGQGNWNAVQKYSGLARCGKSCRLRWANHLRPDLKKGAITEEEENRILELHAKMGNKWARMAAELPGRTDNEIKNYWNTRVKRMQRAGLPIYPPELCQRLLNGNQESQNVGPLTIEASQQDDLSQMDNFDIPNEDFKTFKFLHDPSLEPSIFDMPESNLFEQSLDPSHSYDYLFQSIYHSKRPRKSEMIYNSFGSCTSNVPLFDQYDNYSTEKIYDYPRFSPPFDPVLNTSNQFHGDNINGSHAMLNGNISSSVPEFGAMKMELPSLQYTETQHGSWGMSASSLPRLDSVDTLIQSPPIESIPSDLISPQSSGLLEEIVYNSKMLRDSNNDLFCPDITGTTNEAAGSSTLYHPFKTEWDEQGEPNSPLGQSAVSVLTDYTPISSVDGSQSIETTQDHDDKLEALTQIPNSYMKKENLEQIDFSQRPDALFDLSWFGNDTEYGINQFDLKDALTALIVEESKGDLGEDDKGNLGEDGKGNQ 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g02722 576 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 127 181 IPR017930 -
Spst6g02722 576 FunFam MYB-related transcription factor 78 131 - -
Spst6g02722 576 Gene3D - 134 205 - -
Spst6g02722 576 CDD SANT 136 175 IPR001005 -
Spst6g02722 576 MobiDBLite consensus disorder prediction 50 64 - -
Spst6g02722 576 Pfam Myb-like DNA-binding domain 79 126 IPR001005 -
Spst6g02722 576 Pfam Myb-like DNA-binding domain 132 175 IPR001005 -
Spst6g02722 576 MobiDBLite consensus disorder prediction 555 576 - -
Spst6g02722 576 SUPERFAMILY Homeodomain-like 76 173 IPR009057 -
Spst6g02722 576 Gene3D - 78 131 - -
Spst6g02722 576 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 126 IPR017930 -
Spst6g02722 576 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 52 542 - -
Spst6g02722 576 ProSiteProfiles Myb-like domain profile. 127 177 IPR001005 -
Spst6g02722 576 MobiDBLite consensus disorder prediction 48 75 - -
Spst6g02722 576 FunFam Transcription factor GAMYB 134 180 - -
Spst6g02722 576 CDD SANT 81 126 IPR001005 -
Spst6g02722 576 ProSiteProfiles Myb-like domain profile. 74 126 IPR001005 -
Spst6g02722 576 SMART sant 78 128 IPR001005 -
Spst6g02722 576 SMART sant 131 179 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g02722 Spst-Chr6 96094281 96102434 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g02722 77 563 MYB Transcription Factor Family AT5G06100 39.087 6.41e-87 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst6g02722 Myb_DNA-binding 1.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g02722 K09422 - gmx:100800658 744.191