Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g02712 ATGAATCGTATAGAGAATGGTGTAGAAGCAGTCTCTGATCATGGGTTGCAATCTTGCACCAAAGAGAAGGTGAAGAGATCTGTTTTGGGGTCTTGCAAAGCTGAAGTTGAATCAGTGGCTGGTAAGGAAAACCCTTCCCCAAAAGTGAGTACGTGTAATATCTGCTTCCGGAGTTTTGGCTGCGGCAAGGCTTTAGGTGGACACAGAAGATCCCACTTTTTGAAGCAGCAAAAGAAGGTAAAGATCTGTTCAACTGATAATCAGTCGTCAAAACCTGGTGATAATAACATTAGGGCTAACTGTGATTTTGATGATGACGGTGGCAAACACATTTGTTGTATTTGCAAGAAGGAATTTCCTACCAAAAATGCTTTGTTTGGGCACATGAGGTCTCATCCTGAGAGGCCATGGAGGGGTGTGTCCCCTCCTATTCAAAAGCACTCGTCTTCTCCTTCTTCTTATTATTATTATTCTTCTTCTTATTCTTCCATCAATTCTGATTCCATGGAAAAAAACAAGGAGGATCACGATGTTGATGATGATTGTGGTGGGGGTGAAAGGGTGATTGCACCAGATGAACATCACACAGATGTTATTGATCTTTCAGCTCTTATCTCACCCAGCTGGCTTAAGAAAGATATAAGAGGCAGAAGTTCTATTGGTGGGTATCAGGCTGCTGAAACTCTTTTTTACATGTGTGGTTATTCTAAGTTCTTTCGTAGCGAGTCTAATAGGGTTTTTCCCAAGAAGGATGAAGTGCTGCCAAAGAGTACCCCAAGCCTAATTAAGGAGCGGAAGAGAAAGAATGGCGAATCATCATCAAGTAAGAAAGATAAGGTGAAGAAGATAAGATTTTTATTTAAAGGTGAGTTGCAGTTGGTAAACAAAACTGATGGGGTTGGTGAATTTGATGATGGGGGTAATGAGCTGAATAAGTCCAAGGGTTCATCTGAATCTGGGGTTGAATATAACCATGATGAAAAGAAGATTATGGACGAGGGTTTTGATTATGTGAATGCAGGAATGGTTAACCCAACTGTGCAACATGTTGGTCCTTCTACTGTGAAGAAAGGGAAAAACAGTAGGAAATTGGTACTGAATTCAAGGACAAAGGACTCAGAATCTGAGAATGTGAGTCAAGAGAAAGAGGATAAGTATAAATGTACAGCATGTGGAAAAGGCTTCCCAACTTTCCAAGGCCTAGGAGGGCACAGGTCAATCCATAAAGAGAAGAACATTGTAAGCATTGATGAGTCAAGCCCCTTGGAAGCTGTTGCTGAACAAAACAACTCTAGCAGCTCCAGTAACATGCAAAAGATGGAGGAGCCATTATTGAATGAAGCAACCTTAGCACAACAACCATGCCAATCTTCAGGTGTCAAGACACTGAATTTCGATCTTAATGAGCTGCCTTCTGCTACGGAGGAGGACTGA 1434 0.4163 MNRIENGVEAVSDHGLQSCTKEKVKRSVLGSCKAEVESVAGKENPSPKVSTCNICFRSFGCGKALGGHRRSHFLKQQKKVKICSTDNQSSKPGDNNIRANCDFDDDGGKHICCICKKEFPTKNALFGHMRSHPERPWRGVSPPIQKHSSSPSSYYYYSSSYSSINSDSMEKNKEDHDVDDDCGGGERVIAPDEHHTDVIDLSALISPSWLKKDIRGRSSIGGYQAAETLFYMCGYSKFFRSESNRVFPKKDEVLPKSTPSLIKERKRKNGESSSSKKDKVKKIRFLFKGELQLVNKTDGVGEFDDGGNELNKSKGSSESGVEYNHDEKKIMDEGFDYVNAGMVNPTVQHVGPSTVKKGKNSRKLVLNSRTKDSESENVSQEKEDKYKCTACGKGFPTFQGLGGHRSIHKEKNIVSIDESSPLEAVAEQNNSSSSSNMQKMEEPLLNEATLAQQPCQSSGVKTLNFDLNELPSATEED 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g02712 477 ProSitePatterns Zinc finger C2H2 type domain signature. 52 72 IPR013087 -
Spst6g02712 477 ProSitePatterns Zinc finger C2H2 type domain signature. 388 408 IPR013087 -
Spst6g02712 477 ProSiteProfiles Zinc finger C2H2 type domain profile. 110 132 IPR013087 -
Spst6g02712 477 ProSiteProfiles Zinc finger C2H2 type domain profile. 386 413 IPR013087 -
Spst6g02712 477 MobiDBLite consensus disorder prediction 455 469 - -
Spst6g02712 477 MobiDBLite consensus disorder prediction 365 382 - -
Spst6g02712 477 ProSitePatterns Zinc finger C2H2 type domain signature. 112 132 IPR013087 -
Spst6g02712 477 MobiDBLite consensus disorder prediction 422 442 - -
Spst6g02712 477 Pfam C2H2-type zinc finger 110 134 - -
Spst6g02712 477 Pfam C2H2-type zinc finger 52 72 - -
Spst6g02712 477 Pfam C2H2-type zinc finger 386 410 - -
Spst6g02712 477 MobiDBLite consensus disorder prediction 302 324 - -
Spst6g02712 477 Gene3D Classic Zinc Finger 355 445 - -
Spst6g02712 477 SMART c2h2final6 50 72 IPR013087 -
Spst6g02712 477 SMART c2h2final6 386 408 IPR013087 -
Spst6g02712 477 SMART c2h2final6 110 132 IPR013087 -
Spst6g02712 477 MobiDBLite consensus disorder prediction 349 382 - -
Spst6g02712 477 SUPERFAMILY beta-beta-alpha zinc fingers 110 408 IPR036236 -
Spst6g02712 477 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 38 93 IPR044653 GO:0003700
Spst6g02712 477 MobiDBLite consensus disorder prediction 455 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g02712 Spst-Chr6 95028950 95030383 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g02712 52 143 C2H2 Transcription Factor Family AT2G26940 38.889 7.79e-13 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst6g02712 zf-C2H2_6 3.6e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g02712 - - gmx:102664324 451.055