Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g02708 ATGGCCGTTACCTTCTCAAATCTCTACACAGACTCAGGCCTCAAGTCCCTCAACGACTTCCTCTCGGCGAAGACCTACGTTTCTGGGGATCAGTTCACAAAGGACGACATAAAAGTGTACGCTGCCGTTTTGGAGAAGCCGAGTGACGCTTTCCCCAGTGTTGGCAAGTGGTACGAGGTTGTCTCATCTCACCTTGCTGCAAGCTTCCCTGGCAATGCTCAAGGGGTGAGATTCAGTGGCAAAACTTCTGCTCCAGCTGAGGCTGCACCTGCAAAACCGGATGCTTCTCCTGCTGAAGATGCTGATGACCTTGATCTCTTTAGTGATGAGACAGAGGAAGACAAAAAGGCCGCAGAGGATAGGGAGGCTGCAAAGAAGTCTGCCAAGAAGAAAGAGAGTGGAAAATCTTCTGTTCTGCTCGATGTTAAGCCTTGGGATGATGAGACAGACATGAAGAAGCTAGAAGAGGCTGTTCGAAGTGTTGAGATTCCCGGTTTATTGTGGGGAGCATCCAAACTGGTTCCTGTTGGTTATGGGATCAAGAAGTTGCAGATCATGTTAACCATTGTTGACGACCTTGTTTCTGTGGACTCCCTTATTGAGGAGCAACTGACAGTTGAGCCCATAAATGAGTATGTTCAAAGTTGTGACATAGTTGCATTCAACAAAATTTAA 675 0.4741 MAVTFSNLYTDSGLKSLNDFLSAKTYVSGDQFTKDDIKVYAAVLEKPSDAFPSVGKWYEVVSSHLAASFPGNAQGVRFSGKTSAPAEAAPAKPDASPAEDADDLDLFSDETEEDKKAAEDREAAKKSAKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVEIPGLLWGASKLVPVGYGIKKLQIMLTIVDDLVSVDSLIEEQLTVEPINEYVQSCDIVAFNKI 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g02708 224 Gene3D - 128 224 IPR014717 -
Spst6g02708 224 MobiDBLite consensus disorder prediction 77 102 - -
Spst6g02708 224 CDD EF1B 138 224 IPR014038 GO:0003746|GO:0006414
Spst6g02708 224 SMART EF1_GNE_2 135 224 IPR014038 GO:0003746|GO:0006414
Spst6g02708 224 MobiDBLite consensus disorder prediction 111 130 - -
Spst6g02708 224 Pfam EF-1 guanine nucleotide exchange domain 137 224 IPR014038 GO:0003746|GO:0006414
Spst6g02708 224 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 10 224 - -
Spst6g02708 224 SUPERFAMILY eEF-1beta-like 132 224 IPR036219 -
Spst6g02708 224 SUPERFAMILY GST C-terminal domain-like 11 66 IPR036282 -
Spst6g02708 224 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 213 224 IPR001326 GO:0003746|GO:0005853|GO:0006414
Spst6g02708 224 FunFam Elongation factor 1-beta 1 like 129 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g02708 Spst-Chr6 94668878 94675970 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g02708 1 224 Eukaryotic Initiation Factors Gene Family AT5G12110 69.298 1.21e-102 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g02708 K03232 - gmx:100306132 335.109
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g02708 6 94668878 94675970 Spst8g00677 8 6208136 6211168 PCT