Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g02706 ATGTCCAACAGTGGCTCAAGAAGTGGTCATAGACATGTTGATTTTGGTGACTACTTTTTTGGTCCTAGACTTGAAGGACTCATTGAACAACACATAACCAATGACCGGCTTGGTCCTCCCCCTGCATCACGCTCTTCAATTGATGCAATGCCAACCATTAAGATCACAAATGAACACCTCCAATCTGATTCACACTGTGCAGTTTGTATGGAAAGGTTTGAACTGAGTTCCGAGGCCAGGAAAATGCCATGTGGCCACATTTACCACTCAGACTGTATTGTTCCATGGTTAGTTCAGCACAATTCATGTCCTGTTTGCCGTGTTGAGCTGCCACCTCAAGGACACCCCAGTTCCCGAGGTTGTAGAATTTGGGGAAGAAGGAATGCTAGTGACAGTAGAAGTGGGAATAGAGAGATGAACAATGGAAGGAGAAATCTACTATCATATTTGTGGCCATTTCGAACTTCTACTTCAAATACATGA 483 0.4389 MSNSGSRSGHRHVDFGDYFFGPRLEGLIEQHITNDRLGPPPASRSSIDAMPTIKITNEHLQSDSHCAVCMERFELSSEARKMPCGHIYHSDCIVPWLVQHNSCPVCRVELPPQGHPSSRGCRIWGRRNASDSRSGNREMNNGRRNLLSYLWPFRTSTSNT 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g02706 160 Pfam Ring finger domain 65 107 IPR001841 -
Spst6g02706 160 ProSiteProfiles Zinc finger RING-type profile. 66 107 IPR001841 -
Spst6g02706 160 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 28 111 - -
Spst6g02706 160 SMART ring_2 66 106 IPR001841 -
Spst6g02706 160 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 28 113 IPR013083 -
Spst6g02706 160 SUPERFAMILY RING/U-box 46 113 - -
Spst6g02706 160 FunFam E3 ubiquitin-protein ligase RING1-like 29 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g02706 Spst-Chr6 94549783 94550265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g02706 36 154 C3H Transcription Factor Family AT1G68180 38.211 3.17e-25 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g02706 K11982 - ccaj:109790507 289.656