Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g02681 ATGGACAAGGCAGCTGCTGAACTTCAACTTGAGGCAGCAGATCCTGCTCTTCTTCTTCACCATCATCAGAGTTATACTGGAAATGGGATAGGTGACAGTACCTCCTTGATTCCAGAGTCCAGAAGACCGAACCTCTCCTCTCTACAAATACCAGCAAGATCAGTGGAAAATGCATTATCCTCTTTTACAAAGACAGATGGTCCTACATTGATATCAAGTCCAGGTTCCACTCGAGGACTTCCCCCAAGGCCAAATTCAGCCAGAGTCAAGTCCACTATGAAAAGTTTGCTTTCAGAGAGGAGCTTTAGGGCTAAGAATGGTTCACAAGATAGTGAAAGGACAGTTCTGATTGTTCCTGATAACTTACCATCAGATGGTCCTGTGGATAAGCCTTCAACTTCTAAGCCTTCAACTTCAAGGTCTCTTTCTCTTAACAAGATTTTGTTCCCTTCATCAACCAAAGCCACACATTCATTGCCAGTTACTCCAACTGCAAATTCAGGTGCAGAGATTGTACAAGGAAGACATCTAGGGTGTGATTCTGATTTAAGTAAAATGGAAGTAAATCAGCACATAACTCGATCGGTTTCGGTTCCAGTAAATATCAAAGGTGCTAATTTAAGACGTACAGATTCTAGAAGGTTGATTCGTGTAATTTCAGCAAGATCACTTCTAATTACCAGTGATGGCATTTCATCTCAAAATGCTTCCGGATCAGAGATTGTCATTGAAGATACTTCTGAGGATATTCCAGAGGAAGATGCAGTTTGTAGGATTTGTTTGGTGGAGCTTGCGGAAGGAGGGCATACTCTCAGGATGGAATGCAGCTGTAAAGGTGAGCTTGCACTTGCTCACCAAGACTGTGCAGTAAAGTGGTTTAGTATCAAAGGAAACAAGAGTTGTGATGTCTGCAAGCAGGAAGTCCTTAACCTCCCAGTAACACTCTTGAAAATTGCTAATCCTCAAACTGTTACTCCACAGCCATTAAATGCACCAGCACCACAGCAGAGAGAAGTAACTTATTATAGGATATGGCAGGATTTATCAGTACTTGTCTTGGTCAGCATGCTTGCATACTTTTGTTTTCTTGAGGAACTACTGGTTTCAGATTTGGGCACTCGTGCTCTTGCTATTTCATTACCTTTCTCCTGTGTTTTAGGACTCCTTTCTTCCATGATTGCTTCAACCATGGTGAGCGGGAGCTACATGTGGGCCTATGCTTGCTTCCAGTTTGCAATTGTCATCCTGTTTGCTCATGTGTTTTATACCATACTTAATGTTAATTCCATCCTCTCAGTTCTTCTCTCCTCGTTCACTGGATTTGGGATTTCAATCAGCTTGAATACTTTGGTAACTGAATATGTTAGATGGAGAATGAGAAGACTGATTCAATCTTCTACGACACAACAACCACGTCGTGATCACGCACACCAGCAGCAAGAACATCAAAGACTGCGTCCTCAACTGCTAAGGCCGCAACAAGAGCAGCACCAATGA 1497 0.4255 MDKAAAELQLEAADPALLLHHHQSYTGNGIGDSTSLIPESRRPNLSSLQIPARSVENALSSFTKTDGPTLISSPGSTRGLPPRPNSARVKSTMKSLLSERSFRAKNGSQDSERTVLIVPDNLPSDGPVDKPSTSKPSTSRSLSLNKILFPSSTKATHSLPVTPTANSGAEIVQGRHLGCDSDLSKMEVNQHITRSVSVPVNIKGANLRRTDSRRLIRVISARSLLITSDGISSQNASGSEIVIEDTSEDIPEEDAVCRICLVELAEGGHTLRMECSCKGELALAHQDCAVKWFSIKGNKSCDVCKQEVLNLPVTLLKIANPQTVTPQPLNAPAPQQREVTYYRIWQDLSVLVLVSMLAYFCFLEELLVSDLGTRALAISLPFSCVLGLLSSMIASTMVSGSYMWAYACFQFAIVILFAHVFYTILNVNSILSVLLSSFTGFGISISLNTLVTEYVRWRMRRLIQSSTTQQPRRDHAHQQQEHQRLRPQLLRPQQEQHQ 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g02681 498 MobiDBLite consensus disorder prediction 102 142 - -
Spst6g02681 498 CDD RING_CH-C4HC3_MARCH 257 305 - -
Spst6g02681 498 ProSiteProfiles Zinc finger RING-CH-type profile. 249 311 IPR011016 GO:0008270
Spst6g02681 498 MobiDBLite consensus disorder prediction 61 80 - -
Spst6g02681 498 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 242 311 IPR013083 -
Spst6g02681 498 SMART ringv_2 256 305 IPR011016 GO:0008270
Spst6g02681 498 PANTHER OS02G0165000 PROTEIN 37 477 - -
Spst6g02681 498 MobiDBLite consensus disorder prediction 127 142 - -
Spst6g02681 498 MobiDBLite consensus disorder prediction 465 498 - -
Spst6g02681 498 MobiDBLite consensus disorder prediction 61 88 - -
Spst6g02681 498 Pfam RING-variant domain 257 304 IPR011016 GO:0008270
Spst6g02681 498 SUPERFAMILY RING/U-box 253 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g02681 Spst-Chr6 90960878 90969380 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g02681 251 311 C3H Transcription Factor Family AT2G37950 45.161 3.49e-12 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g02681 - - pvu:PHAVU_006G002500g 848.195