Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g02673 ATGGACAGGTGGTGTCCTAAGCATGGGACAGCGGTGAATTCAGGAAACCAAGTTTCCAGTCAACGCAAGACATCTTTGCTGGTTTGGTCTAACAACAACATACGTTTCATCATGGGAAACACTTGTGCAAAAGGAAAACCGATTGCTCATGTATCTTCCTCCAATTTTTCTGGAAGTAAGAAGCGTGTATCTAAACCAAAGCAGGATTTAAATTCTTCTGAACGAAATCCTGCTCCAAAAACTACAGAATTAAATGTTACTACATCCATCTCCAGTAGCCTCAAGTCCTTCAGCTTAAATGATCTAAAGGAGGCCACTAAGAACTTCCGGCGAGAAAATTTAATCGGAGAGGGAGGATTTGGGCGTGTCTTCAAAGGATGGATTGATGAAAACACATATGGTCCCACAAGACCAGGCACTGGAATTGTGGTGGCCATAAAAAATCTTAAGCCAGAAAGCTTCCAAGGCCACAAGGAATGGCTTGCAGAAGTCAATTATCTTGGGCTGCTTCAGCATGAAAATTTGGTGAAACTTATTGGTTATTGCTTGGAAGGTAAAAACAGGCTTCTAGTTTATGAGTTCATGCAAAAAGGAAGTTTGGAGAATCATTTATTTAGAAAAGGTGTTCAACCTATGGCTTGGGTTACCAGGGTCAACATTGCAATTGGTGTAGCAAGAGGACTAACATTCTTACATTCCCTGGATCAAAATGTCATCTTTCGTGATTTGAAGGCTTCCAATATCCTACTTGATTCAGACTTCAATGCAAAGCTTTCAGATTTTGGCTTGGCAAGGGATGGTCCAACTGGGGATAATACTCACGTTTCAACTAGAGTTATAGGAACTCAAGGCTATGCTGCGCCGGAGTATGTTGCTACAGGTCACTTGACCCCAAGGAGTGATGTATACAGCTTTGGTGTAGTCTTGCTAGAGTTGCTAACCGGTAGGCGAGCAGTGGAAGATGACAGACCTGGATTTTCAGAGGAAACCTTGGTGGATTGGGCAAAGCCATTCTTGAGTGACAATAGAAGAGTTTTGAGAATTATGGACACAAGGTTGGGCGGTCAATATTCCAAGAAAGGAGCACAAGCTGCAGCTGCACTTGCATTGCAATGCCTCAACACTGACCCCAAATTTAGACCCCCTATGGTGGAAGTTCTAGCAGCATTGGAAGGACTTAACTCCTCAATTTCATTCACAAGGACACCACCAAGATCTGACAGCCATGCAACCAAATATTCTGGTGTCCATTCACAAAAGTAA 1263 0.4283 MDRWCPKHGTAVNSGNQVSSQRKTSLLVWSNNNIRFIMGNTCAKGKPIAHVSSSNFSGSKKRVSKPKQDLNSSERNPAPKTTELNVTTSISSSLKSFSLNDLKEATKNFRRENLIGEGGFGRVFKGWIDENTYGPTRPGTGIVVAIKNLKPESFQGHKEWLAEVNYLGLLQHENLVKLIGYCLEGKNRLLVYEFMQKGSLENHLFRKGVQPMAWVTRVNIAIGVARGLTFLHSLDQNVIFRDLKASNILLDSDFNAKLSDFGLARDGPTGDNTHVSTRVIGTQGYAAPEYVATGHLTPRSDVYSFGVVLLELLTGRRAVEDDRPGFSEETLVDWAKPFLSDNRRVLRIMDTRLGGQYSKKGAQAAAALALQCLNTDPKFRPPMVEVLAALEGLNSSISFTRTPPRSDSHATKYSGVHSQK 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g02673 420 Gene3D Transferase(Phosphotransferase) domain 1 195 410 - -
Spst6g02673 420 FunFam Serine/threonine-protein kinase BIK1 76 194 - -
Spst6g02673 420 CDD STKc_IRAK 115 393 - -
Spst6g02673 420 PANTHER OS01G0588500 PROTEIN-RELATED 70 393 - -
Spst6g02673 420 ProSiteProfiles Protein kinase domain profile. 109 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst6g02673 420 MobiDBLite consensus disorder prediction 398 420 - -
Spst6g02673 420 ProSitePatterns Protein kinases ATP-binding region signature. 115 147 IPR017441 GO:0005524
Spst6g02673 420 MobiDBLite consensus disorder prediction 51 85 - -
Spst6g02673 420 Pfam Protein tyrosine and serine/threonine kinase 112 389 IPR001245 GO:0004672|GO:0006468
Spst6g02673 420 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 195 403 - -
Spst6g02673 420 SUPERFAMILY Protein kinase-like (PK-like) 83 391 IPR011009 -
Spst6g02673 420 SMART serkin_6 109 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst6g02673 420 MobiDBLite consensus disorder prediction 70 85 - -
Spst6g02673 420 Gene3D Phosphorylase Kinase; domain 1 84 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g02673 Spst-Chr6 88994170 89000695 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g02673 86 407 Glycoside Hydrolase AT3G07070 49.846 1.09e-101 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Spst6g02673 PK_Tyr_Ser-Thr 2.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g02673 - - vum:124843429 678.707