Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g02644 ATGGCGCACAGATTGCTCAGAGACCATGAAGCCGACGGTTGGGAGCGCTCTGATTTTCCTATTATCTGCGAATCCTGCCTTGGAGACAGCCCCTACATTCGAATGACCAGAGCAGAGTATGACAAGGAGTGCAAGATTTGTACACGGCCATTCACTGTTTTTCGATGGAGACCTGGTCGAGATGCAAGATATAAGAAAACAGAGATCTGCCAGACGTGTAGTAAATTGAAAAATGTCTGTCAAGTGTGCCTTCTGGATCTTGAATATGGACTACCAGTTCAAGTTCGGGACACAGCTCTCAGTATTGATTCCAATGATGCCATTCCAAAGAGTGATGTTAATAGGGAGTATTTTGCTGAAGAGCACGACCGGAGGGCCAGAGCTGGTATAGATTACGAATCCTCTTATGGTAAAGTACGTGCAAATGATACTATCATGAAGCTTCAAAGGACAACACCATATTACAAGAGAAACCGGGCTCATATTTGCAGTTTCTACATAAGGGGTGAATGTACCAGAGGAGCTGAGTGCCCTTATCGACATGAGATGCCAGTAACTGGGGAATTGTCTCAACAAAATATTAAGGATCGTTATTATGGAGTGAACGATCCAGTGGCTTTGAAGCTACTTGGCAAGGCAGGAGAGATGACTACTCTGGAGGCTCCTGAGGATGAAAGCATTAAAACACTTTATGTTGGTGGACTTGATGCTAGGGTCACTGAGCAGGATTTGCGGGATCACTTCTATGCCCATGGAGAAATTGAATCCATCAAAATGGTTCTCCAACGGGCTTGTGCCTTTGTAACATATACAACCAGAGAAGGTGCAGAAAAAGCAGCAGAAGAACTCTCCAACAAATTGGTTATTAAGGGCCTAAGGCTAAAGCTAATGTGGGGCAGGCCTCAGACATCGAAACCTGAGTTTGATGGTTCTGATCAAGCAAGGCAGCAGACATCTGTAGCTCACAGTGGATTATTGCCTCGAGCAGTTATATCACAGCAGCAGAACCAGGACCAAACCCAAGGAATGATTTACTATAACAGTCCACCACCTCCTCAGCAGGAAAGAAGCTACTATCCATCAATGGATCCTCAAAGAATGGGTGCTCGTATTCCATCCCAAGATGGTCCTCCTGGTGGGCCTTCTGGGTCAGGGGAGAACAAGCCTGGTTTGGAAAAGCAGCAGATGCAACATTATCCCCATTCCATGATGCCTCCTCCACCTGGCCAATATCATCATCAATATTATCCTCCATATGGTTATATGCCACCAGCTCCCCCCTATCATCAGTATCCACCATACAATGCTGCAGGGCCACCATCACAGCCACCAGCTGCTAATCATCCTTATCAGCATTCTATGCAGCCAGGGTCTGGACCGGCCACATCTGCCCCAGCTGAAACTGGAACATCAACTTCAGGGTCACAGCAGCAATAA 1437 0.4649 MAHRLLRDHEADGWERSDFPIICESCLGDSPYIRMTRAEYDKECKICTRPFTVFRWRPGRDARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSIDSNDAIPKSDVNREYFAEEHDRRARAGIDYESSYGKVRANDTIMKLQRTTPYYKRNRAHICSFYIRGECTRGAECPYRHEMPVTGELSQQNIKDRYYGVNDPVALKLLGKAGEMTTLEAPEDESIKTLYVGGLDARVTEQDLRDHFYAHGEIESIKMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGRPQTSKPEFDGSDQARQQTSVAHSGLLPRAVISQQQNQDQTQGMIYYNSPPPPQQERSYYPSMDPQRMGARIPSQDGPPGGPSGSGENKPGLEKQQMQHYPHSMMPPPPGQYHHQYYPPYGYMPPAPPYHQYPPYNAAGPPSQPPAANHPYQHSMQPGSGPATSAPAETGTSTSGSQQQ 478
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Spst6g02644 478 FunFam Zinc finger CCCH domain-containing protein 40 213 309 - -
Spst6g02644 478 MobiDBLite consensus disorder prediction 447 478 - -
Spst6g02644 478 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 228 301 IPR000504 GO:0003723
Spst6g02644 478 MobiDBLite consensus disorder prediction 334 352 - -
Spst6g02644 478 Gene3D - 212 307 IPR012677 -
Spst6g02644 478 ProSiteProfiles Zinc finger C3H1-type profile. 157 184 IPR000571 GO:0046872
Spst6g02644 478 SMART rrm1_1 229 297 IPR000504 GO:0003723
Spst6g02644 478 SUPERFAMILY CCCH zinc finger 159 182 IPR036855 GO:0046872
Spst6g02644 478 PANTHER PRE-MRNA-SPLICING FACTOR RBM22 1 376 IPR039171 GO:0003723
Spst6g02644 478 FunFam Zinc finger CCCH domain-containing protein 4 149 208 - -
Spst6g02644 478 Pfam Torus domain 146 194 IPR032297 -
Spst6g02644 478 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 230 288 IPR000504 GO:0003723
Spst6g02644 478 SUPERFAMILY RNA-binding domain, RBD 222 310 IPR035979 GO:0003676
Spst6g02644 478 MobiDBLite consensus disorder prediction 401 446 - -
Spst6g02644 478 CDD RRM_RBM22 227 300 - -
Spst6g02644 478 Gene3D - 148 209 - -
Spst6g02644 478 SMART c3hfinal6 157 183 IPR000571 GO:0046872
Spst6g02644 478 MobiDBLite consensus disorder prediction 334 478 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Spst6g02644 Spst-Chr6 84555872 84559576 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g02644 215 289 Eukaryotic Initiation Factors Gene Family AT1G49760 33.750 5.34e-07 50.4
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g02644 K12872 - gmx:100779917 874.004
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g02644 6 84555872 84559576 Spst8g01018 8 8820563 8824076 PCT