Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g02639 ATGCCACTAGCTCAGTCGAACACTCATAGACCAACGGGTTTAGTGAAGAAGATTGTTGAAATTGGTATTCTTTGTGGGATTGAAGCATGTGCTATAATTTATACTCCAGATAATCCTCAGCCAGAGGTTTGGCCATCTGACAGGGGAGTCCAAAGTGTGCTTTCCAAGTTTAGGGGTGTGTCTGAACTGGAGAAAGGAAAAAAAAAGTTGTGTCAAGAGAGCTTTTTGAGGCAGAGGATCATCAAAGCCCAAGCACAATTGAGGAAACTGAGAAATGAAATTAGGAAGAAAGAGGTGACCCTTCTCATGTTTCAATACCTTAATGCTAAGAACAATTTTGACATTTCTAGAATGATCGATCTAAATGATATCTCCAACTTGATTGATCAAAATTTGGAGAAAATAGAAAACATTATCAATGGAAGCCAGGCTGAAAAGGTGAAACCAATTGTCGAAATCATGAGTCAAGAAGAGCAAGCACTTTGA 486 0.3889 MPLAQSNTHRPTGLVKKIVEIGILCGIEACAIIYTPDNPQPEVWPSDRGVQSVLSKFRGVSELEKGKKKLCQESFLRQRIIKAQAQLRKLRNEIRKKEVTLLMFQYLNAKNNFDISRMIDLNDISNLIDQNLEKIENIINGSQAEKVKPIVEIMSQEEQAL 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g02639 161 Coils Coil 73 100 - -
Spst6g02639 161 Gene3D - 8 79 IPR036879 GO:0003677|GO:0046983
Spst6g02639 161 FunFam Agamous-like MADS-box protein AGL80 4 84 - -
Spst6g02639 161 SUPERFAMILY SRF-like 8 80 IPR036879 GO:0003677|GO:0046983
Spst6g02639 161 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g02639 Spst-Chr6 84351740 84356879 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g02639 18 135 Type I MADS-box Gene Family AT5G48670 45.763 3.35e-31 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Spst6g02639 SRF-TF 3.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g02639 - - var:108319985 246.128