Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g02610 ATGAAAGGACAAAACAGAGAATTCATTGATTCCGCATCCTCATCGGTACCGGTGGTCTCGAACGCGCTTCAGCAGCGTCTCCAATTCATTCTGCAGAGCCGTCCGGAATGGTGGGTCTATGCCATATTCTGGCAAGCCACCAAAGACAGCGACTCCCGTTTCACACTGGAATACGGCGGCGGCTTCTTCAGGGGTGCAAAGGGGAGAGAGGAAAGGGAACATAGCATGTTGGAGGAGCAAAGGAGGAACGTGAACGACATTGAATGGTTCTACAGGGTGTCGCAAACTCGGTCGTACGCCGCCGGGGACGGTGTTGTCGGGTGTGCCTTCAACTCAGGGGTGGATGTTTGGTTGAGCGGAGTGAACGAGTTTGAACTGAACGAGTGTGACGAGAGAGTAGGGGAAGCTCGCAATCATGGGATCCACACTTTAGTCTGCGTTTACGTAGCACGTGGCATCCTTGAGCTGGGTTCGTGTGACGCGTTGAAGTTGGATCATGGGCTTCTTCAAATGGCTAAATCGGTGTTTGAGGAACGTGAGAGTGAGAATCCACTATACAAATGGTGGATGGTTACGGGGAAGGAGAAAGAGAGAAGAAGAGAGCTGGATGGATCGTCGACGGACTCATCAGGGCCTTCTGATGCGGAGGCTCCTTTGGCGTTTGCGGAAGGCAGCAACAATGTTCCGATGATGACGAGAAGGGTAGGGAGCGGACGTGAGATGCTGCCCATAAATCACGTGGAGGCGGAGAGGCAGCGCCGAGAGAAGCTGAATCAGAGATTCTACGCTCTTCGCTCTGCGGTCCCTAATGTCTCTAAGATGGACAAAGCCTCCCTGCTTTCGGACGCTGTTTATTATATCAATGAACTCAAGGCCAAAATCAGCCAGCTGGAGGCCGCATTGGAGACCAAACAGGAAGCTGCTGTAGACCATGTTCAGCCACTCACCTCTGCAACCACTAACATGAGAGTTGAGGTGAAGATCTTGGGGTCCGAGGCCATGATAAGGGTGCAGAGCCTCAACGTGAACCACCCCTCTGCCAGGTTAATGGATGCTCTCAGGGACGTCGATTTGCAAATTCTGCATGCCACAATCTCCAACATCAAAGAGATGATGCTGCAAGACGTTGTAGTCAGGGTTCCCCATCACCTCATGACCCAAGATGCGCTCCAAAATGCTATTCTTCACAGACTCTGA 1197 0.5221 MKGQNREFIDSASSSVPVVSNALQQRLQFILQSRPEWWVYAIFWQATKDSDSRFTLEYGGGFFRGAKGREEREHSMLEEQRRNVNDIEWFYRVSQTRSYAAGDGVVGCAFNSGVDVWLSGVNEFELNECDERVGEARNHGIHTLVCVYVARGILELGSCDALKLDHGLLQMAKSVFEERESENPLYKWWMVTGKEKERRRELDGSSTDSSGPSDAEAPLAFAEGSNNVPMMTRRVGSGREMLPINHVEAERQRREKLNQRFYALRSAVPNVSKMDKASLLSDAVYYINELKAKISQLEAALETKQEAAVDHVQPLTSATTNMRVEVKILGSEAMIRVQSLNVNHPSARLMDALRDVDLQILHATISNIKEMMLQDVVVRVPHHLMTQDALQNAILHRL 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g02610 398 Gene3D - 243 307 IPR036638 GO:0046983
Spst6g02610 398 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 23 176 IPR025610 -
Spst6g02610 398 MobiDBLite consensus disorder prediction 199 223 - -
Spst6g02610 398 PANTHER MYC 19 397 IPR045084 GO:0003700|GO:0006355
Spst6g02610 398 SMART finulus 247 296 IPR011598 GO:0046983
Spst6g02610 398 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 244 310 IPR036638 GO:0046983
Spst6g02610 398 Coils Coil 287 307 - -
Spst6g02610 398 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 241 290 IPR011598 GO:0046983
Spst6g02610 398 Pfam Helix-loop-helix DNA-binding domain 245 290 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g02610 Spst-Chr6 81368586 81369782 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g02610 13 398 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00870 34.507 2.72e-58 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst6g02610 bHLH-MYC_N 1.4e-32 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g02610 - K13422 pvu:PHAVU_004G090300g 593.578