Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g02561 GCACAAATTAAGAAATGGAAAGTTCTCTTGTTGCTGCTTCTGTACGACGTGAAACTGAAGAGAATGAAGAATTCTAAGAAAACGGGTGTACGGAAATACCACAAATCAGAAAATCCACGTCTGCGATGGACACCTGAACTCCATGAATACTTTGTTGAAGTTGTGGAAGGTCTTGGTGGAAAAAACAAGGCAACGCCAAAGAGCATTCTTCAGATGATGCATGTGAAAGGACTAAGAATCTCTCACATTAAAAGCCATCTTCAGGTAGCTTGCTTTTTGAGATGCCAAAAGCGAATATCTGTGAACCTGAAGGGACATGCGATTCTGGCATCAATACATGAGCAGGAGATGGAAGGGAATGAAAATGTTAAAGATCTACCAATGTGCTCCAATTGTTCATCACAAAGTAAATCTCTATCGAAAGAAGTGATATCAGAGCCAAAGGTTGATCGTCAGTTTAAGAGTGGTCTTTGTATCGAAAATTTTCCTGAAAGTGGGTCAGAGCCGAAGGTTGATCGACAGTTTAAGAGTGGTCTTTGTATCGAAAGTGTCCCGTTAGGATGA 564 0.4078 AQIKKWKVLLLLLLYDVKLKRMKNSKKTGVRKYHKSENPRLRWTPELHEYFVEVVEGLGGKNKATPKSILQMMHVKGLRISHIKSHLQVACFLRCQKRISVNLKGHAILASIHEQEMEGNENVKDLPMCSNCSSQSKSLSKEVISEPKVDRQFKSGLCIENFPESGSEPKVDRQFKSGLCIESVPLG 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g02561 187 NCBIfam myb-like DNA-binding domain, SHAQKYF class 38 89 IPR006447 GO:0003677
Spst6g02561 187 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 23 122 IPR046955 GO:0003700
Spst6g02561 187 Pfam Myb-like DNA-binding domain 41 88 IPR001005 -
Spst6g02561 187 Gene3D - 38 94 - -
Spst6g02561 187 SUPERFAMILY Homeodomain-like 37 89 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g02561 Spst-Chr6 72257878 72268205 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g02561 29 89 G2-like Transcription Factor Family AT1G14600 65.574 7.23e-21 85.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Spst6g02561 Myb_DNA-binding 3.7e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g02561 - - vum:124839400 181.03