Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g02498 ATGCTTTTTGGTGTGGTTCTGGCTATGGATTCCTTTGAGCCAGATGGAAATGGGAAGGAGGAGTCACTTCCGCCACCACCTCCTGTTGTTCCCTCTGATGTTGTACCTCTCAAAGCTGAAGAGGTGCTCTCTACCCTTTCAGAACCTGTTAAGAAAAAGGTGGCTTTTACTTATGAAGATGGACGCCCTGTAGAAGGTAAGGGTGTAGGGAGAAAGATAATGGACAGGGTGCAAGAGACATATCATTCTGACTTAAATGGTAAGGACTTTGCATATGATGGGGAGAAAAGTTTGTTTACTATTGGTTCTCTTCCTCGGAACAAGCTTGAGTTTGATGTTGTTCTGGAGGATGTCACTTCTAACAGGAACAATGGAAATTGCAGCCCTGATGGGGACAATGAGAGTGATAGAAAGAGGATGCGACGTCCATACCATGCCAAGTCTTTCAAAGTAGAGATAAGCTATGCTGCGAAAATTCCAATGCAGGCCATCACCAATGCCTTACGTGGGCAAGAGACAGAGAATTTTCAAGAAGCTATTAGAGTTCTTGATATCATTTTGAGGCAGCATGCTGCCAAGCAAGGCTGCTTACTTGTACGTCAATCTTTCTTCCACAATGATTCAAACAATTTTGCTGATGTAGGAGGTGGCGTACTTGGCTGTAGAGGATTCCATTCAAGTTTTAGAACTACACAGAGTGGCCTGTCACTTAACATAGATGTTTCAACTACCATGATAATTACTCCTGGCCCTGTGGTGGATTTCTTAATTTCCAATCAAAATGCTAGAGATCCTTTTCAACTTGACTGGGCTAAGGGTAAAGGTGGAGGGGATGGTGGAGATGGTACCGAGGAAATCACTGTTTATGATTATTTTGTTAAGATAAGAAAGATAGATTTGCGATACTCTGCTGACCTTCCATGCATTAATGTTGGCAAGCCTAAACGACCTACTTATTATCCCATTGAGCTTTGTGAATTGGTATCATTGCAACGATATACAAAAGCTCTGTCCACCCTTCAAAGGGCTTCACTAGTGGAGAAATCCAGGCAGAAACCACAAGACAGGATGAAAATTTTGTCCGATGCACTTAGAAGCAGCAACTATGGGTCTGAACCCTTGCTCCGAAATTGTGGAGTTTCTATAAGCACTGGTTTCACTGAAGTGGAAGGTCGGGTTTTGCCTGCACCAAGGTTGAAGTTTGGCAATGGTGAGGACATTAATCCAAGGAATGGAAGATGGAATGTTAGCAACAAGAGATTTGTGGAACCGTCAAAGATAGAAAGATGGGCTGTTGCCAACTTTTCTGCACGCTGTGATGTACGAGGACTTGTGCGGGACCTGATTAGAATTGGAGATATGAAAGGAATTTTGATAGAGCAACCATTTGATGTGTTTGATGAGAATCCTCAGTTTAGGCGTGCCCCTCCCATGGTTAGAGTGGAGAAGATGTTCGAAAGCATCCAGTCTAAACTTCCGGGAGCTCCTCAGTTCCTTCTCTGTTTGCTTCCTGATCGGAAAAATTGTGATATTTATGGTCCATGGAAAAAGAAGAATCTGGCTGATTTTGGAATTATTAATCAATGTATGTGTCCTACAAGGGTCAATGATCAGCTTCTTACCAATGTTATGTTGAAGATCAATGCCAAGCTTGGTGGATTGAATTCCTTGTTAGGTGTTGAGCATTCTCCATCTCTTCCTATTGTTTCCAAAGCTCCCACCCTCATTCTGGGCATGGATGTGTCACATGGCTCTCCTGGGCAAACTGATATTCCTTCTATTGCTGCGGTGGTCAGCTCTAGACACTGGCCTCTGTTATCTAAGTATAGGGCTTGTGTTCGTACCCAATCTGCTAAGGTTGAAATGATAGATAATTTGTTCAACCAAGTATCTGAAAAGGAAGATGAAGGCATAATGAGGGAACTTTTGCTTGATTTCTATTCGACTTCTGGGAGGAGAAAACCAGAAAATATTATCATATTCAGGGATGGTGTTAGTGAGTCACAGTTCAATCAAGTTTTGAATATTGAACTTGATCGTATCATTGAGGCTTGCAAATTTCTTGATGAAAATTGGGAGCCAAAGTTTGTGGTAATTGTTGCTCAGAAGAACCACCACACCAGATTTTTCCAGCCGAACTCTCCTGACAATGTCCCTCCTGGCAAGAACTGTTGTCGACAATAA 2184 0.4254 MLFGVVLAMDSFEPDGNGKEESLPPPPPVVPSDVVPLKAEEVLSTLSEPVKKKVAFTYEDGRPVEGKGVGRKIMDRVQETYHSDLNGKDFAYDGEKSLFTIGSLPRNKLEFDVVLEDVTSNRNNGNCSPDGDNESDRKRMRRPYHAKSFKVEISYAAKIPMQAITNALRGQETENFQEAIRVLDIILRQHAAKQGCLLVRQSFFHNDSNNFADVGGGVLGCRGFHSSFRTTQSGLSLNIDVSTTMIITPGPVVDFLISNQNARDPFQLDWAKGKGGGDGGDGTEEITVYDYFVKIRKIDLRYSADLPCINVGKPKRPTYYPIELCELVSLQRYTKALSTLQRASLVEKSRQKPQDRMKILSDALRSSNYGSEPLLRNCGVSISTGFTEVEGRVLPAPRLKFGNGEDINPRNGRWNVSNKRFVEPSKIERWAVANFSARCDVRGLVRDLIRIGDMKGILIEQPFDVFDENPQFRRAPPMVRVEKMFESIQSKLPGAPQFLLCLLPDRKNCDIYGPWKKKNLADFGIINQCMCPTRVNDQLLTNVMLKINAKLGGLNSLLGVEHSPSLPIVSKAPTLILGMDVSHGSPGQTDIPSIAAVVSSRHWPLLSKYRACVRTQSAKVEMIDNLFNQVSEKEDEGIMRELLLDFYSTSGRRKPENIIIFRDGVSESQFNQVLNIELDRIIEACKFLDENWEPKFVVIVAQKNHHTRFFQPNSPDNVPPGKNCCRQ 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g02498 727 CDD PAZ_argonaute_like 238 328 - -
Spst6g02498 727 Pfam Mid domain of argonaute 408 461 IPR032473 -
Spst6g02498 727 Pfam Argonaute linker 1 domain 199 247 IPR014811 -
Spst6g02498 727 SUPERFAMILY Ribonuclease H-like 482 721 IPR012337 -
Spst6g02498 727 Pfam N-terminal domain of argonaute 51 187 IPR032474 -
Spst6g02498 727 MobiDBLite consensus disorder prediction 120 139 - -
Spst6g02498 727 Gene3D - 393 559 - -
Spst6g02498 727 Pfam PAZ domain 282 345 IPR003100 GO:0005515
Spst6g02498 727 Gene3D - 566 725 IPR036397 GO:0003676
Spst6g02498 727 Gene3D paz domain 257 333 - -
Spst6g02498 727 ProSiteProfiles PAZ domain profile. 281 329 IPR003100 GO:0005515
Spst6g02498 727 Pfam Argonaute linker 2 domain 355 401 IPR032472 -
Spst6g02498 727 SUPERFAMILY PAZ domain 244 369 IPR036085 GO:0005515
Spst6g02498 727 ProSiteProfiles Piwi domain profile. 498 727 IPR003165 GO:0003676
Spst6g02498 727 SMART DUF1785_2 197 249 IPR014811 -
Spst6g02498 727 SMART Piwi_a_2 498 726 IPR003165 GO:0003676
Spst6g02498 727 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 266 721 - -
Spst6g02498 727 Pfam Piwi domain 499 721 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g02498 Spst-Chr6 60999097 61014099 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g02498 64 716 Eukaryotic Initiation Factors Gene Family AT5G43810 33.898 1.46e-109 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g02498 K11593 - gmx:100820376 1290.02