Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g02482 ATGACTTCCTCACTCGAGAAGATCCAAGGCGAACAGGTCCTCATCAACGAGATTCTGGACCTTTCAATCAAAGATCTGAGTGAGAAAGGGAGTGAGGCTGAGATTCACGAGGTTGGTTTTGGAAGCCATGGGGGAATCTGTGCCATTTGCTTGGATAAAATAGTGCTGCAGGAAACTGCTCTTGTAAAAGGTTGCGAGCATGCTTACTGTGTAACATGCATTCTTCGTTGGGCTACCTACCGTGAAAAAGTTACCTGCCCTCAGTGTAAACATCCATTTGAGTTCCTCAATGTTCATCGCTCACTTGATGGAAGCATTCAAGATTTCATGTTTGAGGAGAGTGTTTGTCTGCTACTTCGAGCCTCATGGTTCAATCCTTTATCTGTTGAAGAACATGTTCATGAAGATTCATATGAAGACCTAGAAGATTACTATCAGTTTGAGGATGACAATGATGAAATAGATGAAGTTTATTATGGTGGTTCATCTAGTTTTCGTATTGGCAACCGCAGATGGGGAGATAACGGTTATGTTAGGGCTGGTCGTCAAGAAGCTCGGCCGGTTCATCGTTCAAATTTCCAGGATTCAGGAGCCAGTTCATCGCGTGAGCCAAAGAAGAAAGAGGTTGCCAAAAGTACCACAGGCAGAAGGGCGAAGAGGGCACTGAAAAGGGAAGCTGCTGATAAGGCAGCTGAAGCAAAACATCAGCAGCATTTGGTACGGCTGGGTAGGAAGTGA 738 0.4499 MTSSLEKIQGEQVLINEILDLSIKDLSEKGSEAEIHEVGFGSHGGICAICLDKIVLQETALVKGCEHAYCVTCILRWATYREKVTCPQCKHPFEFLNVHRSLDGSIQDFMFEESVCLLLRASWFNPLSVEEHVHEDSYEDLEDYYQFEDDNDEIDEVYYGGSSSFRIGNRRWGDNGYVRAGRQEARPVHRSNFQDSGASSSREPKKKEVAKSTTGRRAKRALKREAADKAAEAKHQQHLVRLGRK 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g02482 245 ProSitePatterns Zinc finger RING-type signature. 65 74 IPR017907 -
Spst6g02482 245 CDD RING-HC_Topors 47 93 - -
Spst6g02482 245 ProSiteProfiles Zinc finger RING-type profile. 47 90 IPR001841 -
Spst6g02482 245 MobiDBLite consensus disorder prediction 182 245 - -
Spst6g02482 245 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 28 113 IPR013083 -
Spst6g02482 245 MobiDBLite consensus disorder prediction 200 238 - -
Spst6g02482 245 SUPERFAMILY RING/U-box 46 96 - -
Spst6g02482 245 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 4 245 - -
Spst6g02482 245 SMART ring_2 47 89 IPR001841 -
Spst6g02482 245 Pfam Ring finger domain 47 90 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g02482 3 245 C3H Transcription Factor Family AT5G19430 60.630 1.95e-95 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g02482 - - gmx:100785472 416.772