Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g02479 ATGGAACGAAGTGGTGGTGGAATGGTATCTGGGTCGCATGAAAGGAACGAACTTGTGAGAGTGAGACACGACTCTGATAGTGGGTCTAAACCCTTGAAGAATTTGAATGGCCAGATTTGTCAAATATGTGGTGATACCATTGGATTAACGGCTACTGGTGATGTCTTTGTTGCTTGTCATGAGTGTGGCTTCCCACTTTGTCATTCTTGTTACGAGTATGAGCTGACAAATATGAGCCAATCTTGCCCCCAGTGCAAGACTAGATTCACAAGTCACCAAGAGGGTGCTGGAGCGGAGGGTGATGACGATGATGAAGACGATGCTGATGATCTAGACAATGAGACCAAGTACGGCCAAGGAAACAATTCCAAGGCAGGGATGCAATGGGAAGAAGATGCTGACCTCTCTTCATCTTCTGGACATGATTCTCAAATACCAAATCCCCATCTAGAAAACGGGCAACCGATGTCTGGTGATATTCCATGTGCTACTTCTGATGCTCAATCTATGCAAACTACATCAGGTCCTATGGTTATTACAAAACAACCAGGTCCTGAAAGCGATGAAGAGATAAGGAGAGTTCCTGAGATTGGAGGTGAAAGTGCTGGAACTTCAGCCTCTCGGCCAGATGCCGGATCAAATGTGGGCACAGATCGGGTTCGGGGGACAGGAGAGGGTCAGAAGAAGAGAGGGAGAAGCCCAGCTGATAAAGAAAGCAAGCGGCTAAAGAGGCTATTGAGGAACAGAGTTTCGGCTCAACAAGCAAGGGAGAGGAAGAAGGCATACTTGATTGATTTGGAAACAAGAGTCAAAGACTTGGAGAAGAAGAATTCAGAGCTCAAGGAAAGACTTTCGACTTTGCAGAATGAGAACCAAATGCTTAGACAAATTTTGAAGAACACAACAGCAAGCAGAAGAGGGAGCAATAGTGGTACCAATAATGCTGAATGA 951 0.4564 MERSGGGMVSGSHERNELVRVRHDSDSGSKPLKNLNGQICQICGDTIGLTATGDVFVACHECGFPLCHSCYEYELTNMSQSCPQCKTRFTSHQEGAGAEGDDDDEDDADDLDNETKYGQGNNSKAGMQWEEDADLSSSSGHDSQIPNPHLENGQPMSGDIPCATSDAQSMQTTSGPMVITKQPGPESDEEIRRVPEIGGESAGTSASRPDAGSNVGTDRVRGTGEGQKKRGRSPADKESKRLKRLLRNRVSAQQARERKKAYLIDLETRVKDLEKKNSELKERLSTLQNENQMLRQILKNTTASRRGSNSGTNNAE 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g02479 316 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 167 313 IPR044280 GO:0000981|GO:0045944
Spst6g02479 316 SUPERFAMILY Leucine zipper domain 240 298 IPR046347 GO:0003700|GO:0006355
Spst6g02479 316 MobiDBLite consensus disorder prediction 158 180 - -
Spst6g02479 316 Pfam Zinc-binding RING-finger 30 106 IPR027934 -
Spst6g02479 316 MobiDBLite consensus disorder prediction 93 244 - -
Spst6g02479 316 Coils Coil 235 304 - -
Spst6g02479 316 MobiDBLite consensus disorder prediction 222 244 - -
Spst6g02479 316 CDD bZIP_HY5-like 241 292 - -
Spst6g02479 316 MobiDBLite consensus disorder prediction 98 112 - -
Spst6g02479 316 CDD mRING-HC-C4C4_CesA 38 88 - -
Spst6g02479 316 SMART brlzneu 236 300 IPR004827 GO:0003700|GO:0006355
Spst6g02479 316 MobiDBLite consensus disorder prediction 15 29 - -
Spst6g02479 316 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 243 258 IPR004827 GO:0003700|GO:0006355
Spst6g02479 316 Gene3D Single helix bin 259 300 - -
Spst6g02479 316 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 238 301 IPR004827 GO:0003700|GO:0006355
Spst6g02479 316 ProSiteProfiles Zinc finger RING-type profile. 40 86 IPR001841 -
Spst6g02479 316 SUPERFAMILY RING/U-box 23 110 - -
Spst6g02479 316 FunFam Cellulose synthase A catalytic subunit 1 [UDP-forming] 23 114 - -
Spst6g02479 316 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 115 IPR013083 -
Spst6g02479 316 MobiDBLite consensus disorder prediction 115 151 - -
Spst6g02479 316 Pfam bZIP transcription factor 237 298 IPR004827 GO:0003700|GO:0006355
Spst6g02479 316 MobiDBLite consensus disorder prediction 1 30 - -
Spst6g02479 316 FunFam Transcription factor HY5 259 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g02479 Spst-Chr6 58086112 58089096 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g02479 8 185 Glycosyltransferase AT2G25540 52.809 3.46e-54 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Spst6g02479 zf-UDP 2.6e-35 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g02479 K10999 - gmx:548004 548.51