Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g02477 GCAAATGTGCTGTTCCTTGAATCCCCTGCTGGAGTAGGCTTTTCATACTCAAACACTACTTCAGACTATGATCATGCAGGAGATAAGAATACTGCTAAAGATGCCTATGTTTTCCTCATCAATTGGCTAGAAAGGTTTCCACAGTACAAAACTCGTGATTTCTACATAACTGGAGAGAGCTATGCTGGCCATTATGTGCCTCAGCTTGCATACACTATTTCGCTGAACAATAAATTCAGTAACCAAAATATTAACCTCAAAGGCATTGCTATAGGGAATGCTTGGATTGATGATGTGACAAGTATTAAGGGGATATTCGATTACTTATGGACTCATGCTTTGAGCTCAGATCAAACACATGAGTTGATTGAGAAGTACTGCGATTTCACTTCTGAAAAAGTTTCTGTGATATGTACCAAGGCAACAACTACAGCCTTTATTGAGAAAGGGAAGATAGACTCTTACAACATCTACGCTCCACAGTGTCACGATTCTTCTCTCAGAAATGAATCAAATGGTTCTGGGAAAGCCTATCTAAATAGGCCTGAAGTTCAACTAGCTCTGCATGCAAAACCCACAAACTGGAGCCATTGCAGTGGTGATACTGATTCAGTGGTGCCAGTCACATCTTCCAGATATTCAGTCAACACCCTCAAGCTCCCTATCCAAGTTCCTTGGCGTCCATGGTATTCGGGCAATGAGGTTGGAGGGTATGTGGTGAAATACCAAGGAGTGACGTTTGTTACAGTAAGAGGAGCAGGACATTTGGTGCCAAGCTGGCAACCAGCGCGAGCTCTAACCTTCATCTCCTCATTCCTCTATCGAACCCTTCCTCCTGCTTCACCATGGAAGGGTTTCTAA 861 0.4309 ANVLFLESPAGVGFSYSNTTSDYDHAGDKNTAKDAYVFLINWLERFPQYKTRDFYITGESYAGHYVPQLAYTISLNNKFSNQNINLKGIAIGNAWIDDVTSIKGIFDYLWTHALSSDQTHELIEKYCDFTSEKVSVICTKATTTAFIEKGKIDSYNIYAPQCHDSSLRNESNGSGKAYLNRPEVQLALHAKPTNWSHCSGDTDSVVPVTSSRYSVNTLKLPIQVPWRPWYSGNEVGGYVVKYQGVTFVTVRGAGHLVPSWQPARALTFISSFLYRTLPPASPWKGF 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g02477 286 Gene3D - 200 276 - -
Spst6g02477 286 FunFam Carboxypeptidase 3 164 - -
Spst6g02477 286 Gene3D alpha/beta hydrolase 1 164 IPR029058 -
Spst6g02477 286 PRINTS Carboxypeptidase C serine protease (S10) family signature 6 16 IPR001563 GO:0004185|GO:0006508
Spst6g02477 286 PRINTS Carboxypeptidase C serine protease (S10) family signature 245 258 IPR001563 GO:0004185|GO:0006508
Spst6g02477 286 PRINTS Carboxypeptidase C serine protease (S10) family signature 42 67 IPR001563 GO:0004185|GO:0006508
Spst6g02477 286 ProSitePatterns Serine carboxypeptidases, histidine active site. 245 262 IPR033124 GO:0004185
Spst6g02477 286 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 1 262 IPR001563 GO:0004185|GO:0006508
Spst6g02477 286 FunFam Carboxypeptidase 185 275 - -
Spst6g02477 286 Pfam Serine carboxypeptidase 1 199 IPR001563 GO:0004185|GO:0006508
Spst6g02477 286 SUPERFAMILY alpha/beta-Hydrolases 1 276 IPR029058 -
Spst6g02477 286 ProSitePatterns Serine carboxypeptidases, serine active site. 56 63 IPR018202 GO:0004185
Spst6g02477 286 Gene3D - 172 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g02477 Spst-Chr6 57787387 57789390 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g02477 199 273 Calmodulin-binding Proteins AT2G22960 31.579 1.92e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g02477 K16297 - gmx:100790394 507.679