Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g02472 ATGTCTCACCAGCCTCATGTTCACACCGACCGAGCTAGTTCTGTTTCTGATGCAATTCTTCCTTCAGCTTCTGTTTCACATGGAAGTGCAAGAGCTTCTTCCGGATCAAATAAGAAAGACATGACTTTGGCAGGACATTTTGTGCTTGCCAAATGTGTTGATTATACTGACCGAGGTTCTTTATTGGTCTTAACTACAGGCTATTACTGCTTTGAAAAAAGGGGCTCACTTGCTCAAGTATGGAAGAAGAGGGAAGCCCAAGTTTTGTCCCTTTCGACTTTCCAATGTGGTTGGGGATTCTCATCACCCCCGCCCCCACATTCTTCTCAGAAGCTGAGTTGTAGGCTTTTAGCACAACGTGTAGATTGGGCTTGGAAAGAAGAGAAGCGCCTTAAACTAACTAATGTTTCTAGGATTATATCTGGACAACGCACAATTTGTAAGGATAAAGATGAAGCTGAGGTTTGGTTCAGTGGATTGAAAGCATTAATTTCACGCAGTCATCACCGGAAGTGGAAATCGGAGTCAAGAAGTGATGGTATACCATCTGAAGCTAATAGTCCTCGAACATACACTAGAAGAAGTTCTCCCTTGAATTCTCCATTTGGTAGTAATGAAAGCTTGGCAAAGGATAGTGGGGATCATCTTCACCTTCATAGCCCATATGAAAGCCCCCCAAAAAATGGTTTGGATAAAGCATTTTCTGATGTGATTTATTATCCTATTCCTCCAATGGGTTTCTTCCCTCCAGATTCTGTGAGTGGTTCACTTCACTCAGTGTCACCAGGAGGATCAGAGAGCATGCATGGTCAAATGAAGACAATGCCTATGGATGCTTTTAGAGTTAGTCTGTCAAGTGCTGTTAGCTCCTCTAGCCAAGGTTCTGGTCATGATGATGGTGATGCCTTGGGAGATGTTTTCATTTGGGGGGAGGGCACAGGTGATGCTGTACTGGGTGGTGGAGCTCATCTAGTTGGGAGTGATTTTGGTGTCAAAATGGATTCTCTGTTGCCCAAAGCCTTGGAATCAGCAGTAGTTCTTGATGTACAAAATATCGCTTGTGGTGGGAAACATGCGGCCTTAGTTACCAAACAAGGTGAAATTTTTTCCTGGGGGGAAGAATCAGGAGGAAGGCTTGGGCATGGAGTTGATTCTGATGTTCCACATCCAAAGCTTATTGAATCTCTAAGTAATACAAATATTGAACTTGTTGCTTGTGGGGAGTATCATACATGTGCTGTGACACTTTCAGGTGATCTTTATACATGGGGTGATGGCACTTACTATTATGGTCTTCTGGGGCATGGAAATCAGGTGAGCCACTGGGTCCCAAAAAGAGTCAATGGCCCTTTGGAGGGCATACATGTTTCATCTATTTCTTGTGGTCCATGGCACACTGCTGTAGTAACCTCTGCTGGGCAATTATTTACTTTTGGTGATGGCACATTTGGTGTTCTGGGGCATGGAGACCGAAAAAGTGTTTCCTTACCAAGAGAAATAGAGTCCTTGAAGGGGCTTCGTACTGTTCAGGCTGCTTGTGGTGTTTGGCATACTGCTGCTGTTGTGGAGGTCATGGTTGGAAATTCAAGTTCCAGCAACTGCTCTTCAGGGAAGCTGTTTACATGGGGTGATGGAGACAAAGGTCGACTTGGGCATGGTGACAAGGAATCAAAACTTGTTCCAACCTGTGTCGTCGTGGCTCTTGTTGAACCTAATTTTTGTCAAGTGTCCTGTGGTCATAGTATGACTGTTGCACTTTCTAGATCAGGTCATGTCTATACAATGGGCAGTTGTGTCTATGGCCAGTTAGGAAATACTCAAGCTGATGGGAAGCTACCTACCCGTGTAGAAGGAAAGCTTTCAAAGAGTTTTGTAGAAGAGCTAGCTTGTGGTGCATATCATGTTGCAGTTTTAACTTCAAAGACTGAAGTTTTCACTTGGGGGAAGGGTGCAAATGGTCGTTTAGGCCATGGGGATACTAATGATAGAAACACCCCCACATTAGTAGAAGCTCTGAAAGACAAACAAGTAAAAAGTATTGCTTGTGGTACAAATTTCACAGCAGCCATATGTCTGCATAAGTGGGTATGTGGTGTTGACCAGTCTATGTGTTCAGGATGCCGCCTGCCATTCAATTTCAAAAGGAAACGCCACAATTGTTATAACTGTGGACTTGTTTTTTGTCATTCATGCAGTAGTAAGAAATCTGTTAAGGCTTCAATGGCACCAAATCCCAACAAACCTTATCGTGTCTGTGATAATTGTTTTAATAAAATAAGAAAAACTACCGAAGCTGATTCTTCATCTCAGTCTTCTATGAGCCGAAGAGGAAGTGTTAATCAGGGGTCACTTGAGTTTATTGGTAAGGATGACAAATTTGATTCCAGATCTCATAATCAACTTGCAAGGTTTTCTTCAATGGAATCCTTGAAACAAGTGGACAGCAGATATTCAAAGAAAAACAAAAAGTTGGAATTCAACAGTAGCCGCGTCTCACCTGCTCCAAATGGTGGTTCGCAGTGGGGAGCAATGAATATTTCAAAATCTTTCAATCCTGTTTTTGGATCATCGAAGAAGTTTTTCTCAGCTTCTGTTCCTGGGTCTAGAATTGTTTCCCGGGCAACATCCCCAATATCCAGACGACCTAGTCCACCTCGTTCAACTACTCCAACCCCAACAATAGGGGGACTTTCATCCCCAAAGATAGTTGTGGATGATGCTAAGAGAACCAATGATAACCTCAGTCAGGAGGTTATTAAATTAAGGTCGCAGGTGGAAAACCTGACTCGGAAAGCCCAGCTTCAAGAAGTGGAGTTGGAAAGAACAACTAAACAGTTAAAAGAAGCAATAGCAATTGCAAGTGAAGAAACTGCCAAATGCAAAACAGCAATGGAAGTGATCAAGTCACTTACTGCCCAGTTGAAGGACATGGCCGAGAGGTTGCCTATAGGAGCATATAGGACTGTCAGATCACCACCCTCTCTTGCTTCCTTTGGTTCAAATACAGGTTCCAATGACCTTACCAATGCTTCCTTTGACCGATTGAATATTCAAGCAACAAGCCCAGAATCAGACGCAACTGGATCCAATAACCAGTTACTTTCAAATGGATCTAGCACCATCATCAACCGGAGTGTAGGTCACACTAAACATAGTCAGTCAGATGCTACTAGCACAGGTCACATTAAACATGGTCAATCAGATGCAAGTAGCAGAAGTGGAAGCAAAACAAAGGATAATGAGACTGAATGGGTTGAGCAAGATGAACCTGGTGTCTATATTACTCTCACCTCCCTACCAGGAGGTGTAATAGATCTTAGAAGAGTTCGCTTCAGTCGGAAACGGTTTAGTGAGAAACAAGCAGAACAATGGTGGGCCGAGAATCGGGCAAGAGTATATGAACAGTACAATGTGCGCATGATTGACAAGTCGACAATTGGTGTTGGGGGTGGAGACCTGGCTCATTGA 3468 0.4337 MSHQPHVHTDRASSVSDAILPSASVSHGSARASSGSNKKDMTLAGHFVLAKCVDYTDRGSLLVLTTGYYCFEKRGSLAQVWKKREAQVLSLSTFQCGWGFSSPPPPHSSQKLSCRLLAQRVDWAWKEEKRLKLTNVSRIISGQRTICKDKDEAEVWFSGLKALISRSHHRKWKSESRSDGIPSEANSPRTYTRRSSPLNSPFGSNESLAKDSGDHLHLHSPYESPPKNGLDKAFSDVIYYPIPPMGFFPPDSVSGSLHSVSPGGSESMHGQMKTMPMDAFRVSLSSAVSSSSQGSGHDDGDALGDVFIWGEGTGDAVLGGGAHLVGSDFGVKMDSLLPKALESAVVLDVQNIACGGKHAALVTKQGEIFSWGEESGGRLGHGVDSDVPHPKLIESLSNTNIELVACGEYHTCAVTLSGDLYTWGDGTYYYGLLGHGNQVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSLPREIESLKGLRTVQAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKESKLVPTCVVVALVEPNFCQVSCGHSMTVALSRSGHVYTMGSCVYGQLGNTQADGKLPTRVEGKLSKSFVEELACGAYHVAVLTSKTEVFTWGKGANGRLGHGDTNDRNTPTLVEALKDKQVKSIACGTNFTAAICLHKWVCGVDQSMCSGCRLPFNFKRKRHNCYNCGLVFCHSCSSKKSVKASMAPNPNKPYRVCDNCFNKIRKTTEADSSSQSSMSRRGSVNQGSLEFIGKDDKFDSRSHNQLARFSSMESLKQVDSRYSKKNKKLEFNSSRVSPAPNGGSQWGAMNISKSFNPVFGSSKKFFSASVPGSRIVSRATSPISRRPSPPRSTTPTPTIGGLSSPKIVVDDAKRTNDNLSQEVIKLRSQVENLTRKAQLQEVELERTTKQLKEAIAIASEETAKCKTAMEVIKSLTAQLKDMAERLPIGAYRTVRSPPSLASFGSNTGSNDLTNASFDRLNIQATSPESDATGSNNQLLSNGSSTIINRSVGHTKHSQSDATSTGHIKHGQSDASSRSGSKTKDNETEWVEQDEPGVYITLTSLPGGVIDLRRVRFSRKRFSEKQAEQWWAENRARVYEQYNVRMIDKSTIGVGGGDLAH 1155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g02472 1155 PRINTS Chromosome condensation regulator RCC1 signature 637 658 IPR000408 -
Spst6g02472 1155 PRINTS Chromosome condensation regulator RCC1 signature 418 434 IPR000408 -
Spst6g02472 1155 PRINTS Chromosome condensation regulator RCC1 signature 349 362 IPR000408 -
Spst6g02472 1155 PRINTS Chromosome condensation regulator RCC1 signature 475 489 IPR000408 -
Spst6g02472 1155 PRINTS Chromosome condensation regulator RCC1 signature 368 384 IPR000408 -
Spst6g02472 1155 PRINTS Chromosome condensation regulator RCC1 signature 579 597 IPR000408 -
Spst6g02472 1155 PRINTS Chromosome condensation regulator RCC1 signature 459 475 IPR000408 -
Spst6g02472 1155 SUPERFAMILY FYVE/PHD zinc finger 695 765 IPR011011 -
Spst6g02472 1155 MobiDBLite consensus disorder prediction 872 900 - -
Spst6g02472 1155 MobiDBLite consensus disorder prediction 1046 1073 - -
Spst6g02472 1155 MobiDBLite consensus disorder prediction 179 207 - -
Spst6g02472 1155 Gene3D - 281 534 IPR009091 -
Spst6g02472 1155 Gene3D - 535 705 IPR009091 -
Spst6g02472 1155 ProSiteProfiles BRX domain profile. 1082 1137 IPR013591 -
Spst6g02472 1155 Coils Coil 904 956 - -
Spst6g02472 1155 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 590 641 IPR000408 -
Spst6g02472 1155 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 352 362 IPR000408 -
Spst6g02472 1155 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 366 417 IPR000408 -
Spst6g02472 1155 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 537 589 IPR000408 -
Spst6g02472 1155 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 418 472 IPR000408 -
Spst6g02472 1155 Pfam Regulator of chromosome condensation (RCC1) repeat 417 469 IPR000408 -
Spst6g02472 1155 Pfam Regulator of chromosome condensation (RCC1) repeat 589 638 IPR000408 -
Spst6g02472 1155 Pfam Regulator of chromosome condensation (RCC1) repeat 536 586 IPR000408 -
Spst6g02472 1155 Pfam Regulator of chromosome condensation (RCC1) repeat 643 690 IPR000408 -
Spst6g02472 1155 Pfam Regulator of chromosome condensation (RCC1) repeat 473 521 IPR000408 -
Spst6g02472 1155 Pfam Regulator of chromosome condensation (RCC1) repeat 366 414 IPR000408 -
Spst6g02472 1155 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 642 693 IPR000408 -
Spst6g02472 1155 Pfam FYVE zinc finger 694 760 IPR000306 GO:0046872
Spst6g02472 1155 MobiDBLite consensus disorder prediction 1046 1084 - -
Spst6g02472 1155 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 473 524 IPR000408 -
Spst6g02472 1155 MobiDBLite consensus disorder prediction 171 227 - -
Spst6g02472 1155 Pfam Transcription factor BRX N-terminal domain 955 987 IPR027988 -
Spst6g02472 1155 Pfam Unstructured region between BRX_N and BRX domain 997 1058 - -
Spst6g02472 1155 FunFam PH, RCC1 and FYVE domains-containing protein 1 275 526 - -
Spst6g02472 1155 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 511 521 IPR000408 -
Spst6g02472 1155 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 698 760 IPR017455 -
Spst6g02472 1155 SMART fyve_4 692 761 IPR000306 GO:0046872
Spst6g02472 1155 FunFam PH, RCC1 and FYVE domains-containing protein 1 527 699 - -
Spst6g02472 1155 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 459 469 IPR000408 -
Spst6g02472 1155 Pfam Transcription factor regulating root and shoot growth via Pin3 1081 1136 IPR013591 -
Spst6g02472 1155 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 127 976 - -
Spst6g02472 1155 Coils Coil 960 980 - -
Spst6g02472 1155 SUPERFAMILY RCC1/BLIP-II 304 695 IPR009091 -
Spst6g02472 1155 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 304 365 IPR000408 -
Spst6g02472 1155 FunFam Putative E3 ubiquitin-protein ligase HERC1 700 768 - -
Spst6g02472 1155 CDD FYVE_like_SF 703 756 - -
Spst6g02472 1155 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 706 767 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g02472 Spst-Chr6 57694139 57718942 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g02472 965 1146 Major Intrinsic Protein MIP AT1G31880 33.516 8.40e-16 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g02472 - - var:108342748 1888.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g02472 6 57694139 57718942 Spst6g02472 6 57694139 57718942 ECH
Spst6g02472 6 57694139 57718942 Spst8g00740 8 6845805 6853082 PCT