Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g02469 ATGACGAGTGTGATCCTCAGAAGATCCTCTTCCCTAATCTCGCGCCGCCTCTGCGCCTCTCTCGCCTCTGTTGAACCGCTTCCGCATCACCGCCTGATCGCCGCGCTCCGGCACGGTGGCTCTAGCGGCGGAGTTGGAGTCAGATCCTTGCACGCGAAATTTGGACCATTGAACTTCCGCTCGTCGCCGGTTTCTCGCGCGGCGCAGTTCGCCTTGGAGCGCGACTACCCCAATGATGATGTAGGTTGCAGCGTGAACTACGATGAAGGACTCGAGATCGCGAAACTCGGGATATCGACGCATATCGTGGATGCTTTGGCCAAGAAAGGAATCGCGAAGCTGTTTCCTATTCAGAGAGCTGTGCTGGAACCTGCAATGCAAGGACGTGATATGATTGGTCGAGCTAGGACAGGAACTGGGAAAACTCTCGCATTTGGGATACCCATCTTGGACAGGATTATTCAACTTAACGCTAAGCATGGGCGTGGAAAAGATCCTTTGGCTTTGGTTTTGGCTCCAACTAGAGAACTTGCACGGCAGGTTGAGAAGGAATTCAATGAGGCTGCACCTAACCTGGACACGATCTGTCTTTATGGGGGTATGCCCATCCACCAACAAATGAGGCAGCTTAATTATGGTGTAGATATTGCAGTTGGCACACCTGGTCGAATTATTGATCTTCTCAATAGGGGAGCACTGAATTTGAAGGATGTCAAGTTTGTTGTTCTTGATGAAGCTGATCAGATGCTTCAAGTAGGATTTCAAGAAGCTGTGGAGAAGATCTTGGAGAGATTGTCTTCAAATCGTCAGACTCTTATGTTCTCAGCAACAATGCCATCTTGGATAAAGAGTATTACCCGCAATTACCTAAACAACCCCCTTACCATTGATCTTGAACGTGCGAATGGAGGAAAGTGTATTGTTTTCACTCAAACCAAACGTGATGCTGATCGATTATCATATGTCATGGCCAAAAGCCTTAAATGTGAGGCTTTGCATGGAGATATTTCTCAAACTCAGAGGGAAAGGACTCTTGCTGGCTTCAGAAACAACAATTTCAATGTTTTAGTGGCAACTGATGTTGCATCACGTGGCCTCGATATTCCAAATGTGGATCTCGTAATACATTATGATCTTCCCAATTCATCAGAGATATTTGTTCACCGATCTGGACGAACGGGCCGTGCTGGGAAGAAAGGAGCTGCTATTCTTGTTTACTCAGAAGATCAATTCAGGACTGTGAAGACTATTGAGCGTGATGTTGGATGCAAATTTACAGAG 1281 0.4715 MTSVILRRSSSLISRRLCASLASVEPLPHHRLIAALRHGGSSGGVGVRSLHAKFGPLNFRSSPVSRAAQFALERDYPNDDVGCSVNYDEGLEIAKLGISTHIVDALAKKGIAKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDRIIQLNAKHGRGKDPLALVLAPTRELARQVEKEFNEAAPNLDTICLYGGMPIHQQMRQLNYGVDIAVGTPGRIIDLLNRGALNLKDVKFVVLDEADQMLQVGFQEAVEKILERLSSNRQTLMFSATMPSWIKSITRNYLNNPLTIDLERANGGKCIVFTQTKRDADRLSYVMAKSLKCEALHGDISQTQRERTLAGFRNNNFNVLVATDVASRGLDIPNVDLVIHYDLPNSSEIFVHRSGRTGRAGKKGAAILVYSEDQFRTVKTIERDVGCKFTE 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g02469 427 SMART ultradead3 110 312 IPR014001 -
Spst6g02469 427 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 293 427 IPR001650 -
Spst6g02469 427 Gene3D - 295 427 IPR027417 -
Spst6g02469 427 SMART helicmild6 317 397 IPR001650 -
Spst6g02469 427 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 418 IPR027417 -
Spst6g02469 427 Gene3D - 92 294 IPR027417 -
Spst6g02469 427 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 122 296 IPR014001 -
Spst6g02469 427 CDD SF2_C_DEAD 298 406 - -
Spst6g02469 427 FunFam ATP-dependent RNA helicase RhlE 80 299 - -
Spst6g02469 427 Pfam DEAD/DEAH box helicase 115 283 IPR011545 GO:0003676|GO:0005524
Spst6g02469 427 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 92 300 - -
Spst6g02469 427 Pfam Helicase conserved C-terminal domain 299 397 IPR001650 -
Spst6g02469 427 CDD DEADc 102 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g02469 Spst-Chr6 57398677 57403650 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g02469 96 427 Eukaryotic Initiation Factors Gene Family AT3G19760 30.874 1.41e-61 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g02469 - - gmx:100802553 674.47