Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g02461 ATGAACAACAGTGTTCCTGATTGGAGTTTTGGGAGTGATTCCTGTGTCACCTCCAATCAAAAGAAGCCTATGGGGGTGGACCAAGAACTTGTGGAGCTCCTGTGGCAAAATGGCCAGGTAGTGTTGAACAGCCAAACACATAGAAAACCGGTTATGAATTCGATGGTGCCGAGACCGCTTCAGAGAAATTTTCAATCAACATTAAGGACTAATGAGCCATTTGGGAACTCAAGTAACTTGATTCATGATGATGAGACAGTCTCATGGATCCAATACCCTCTTGAGGATCCATTGGAACAAGAATTCTGTTCAAACCTTTTAACTGAACTGCCACAGTGTGATGTTGAGTCCTATAGGCAAATCAAGTCATTTGAAGAGGGAAAGTTTACCAAATTGGATGCTTCTAGTACCCCCCATGTGACTGTAAGTTCACAATCACCTAATATGAAATCGTCCTCTTTTCAGGAATTCTCAGGAATTCCTATACCTGCTCCAAGATTCCATGTTTCTGATTCACCTCAGAAAAACAATAATGGCTTGGGTGGACCATGTAAGGTCCAAAACTTCTCTCATTTTTCACCAACCCCTAATGTTTCCCCAGCATTGCCTGATGCGCATTTTAGAGACAAAATTACTGGTAACATGTCAAAAAATGAGGTTAGAGAGTGCTCATTGATGACAGTTGGATCAAGCTACTGCGGTAGCAATCACATGACCCAAGATCCAGATGCAAGCAGGGCATCAAGCAATGGTGCTTGGACTACTACTTTATCTGTTGAGCCTGAAGCTGTCAGAGATGATATGCCCAGAACAATTCCACAGAGTGAGAAAGGGAAACCAGACATGATTGAACCAACTGCAACTTCATCTTCTGGTGGCTCAGGTAGTAGTCTTGGAAAAACATGTTCCTTATCTACCAGAAACCAGAGTCAAAAAAGAAAAACAATAGATGTGGAAGAATCTGAGGATCATAGTGAGGACACAGGACTTAAATCAGCAGTTGGAAGCAAGGCATCTCAACGGACAGGGGCGGCTCGAAGGAACCGTGCTGCCGAAGTGCATAATCTATCAGAAAGGAGAAGACGAGATAGGATCAATGAGAAGATGAAAGCATTGCAACAACTCATACCTCACAGTAGCAAGACAGACAAAGCATCAATGTTGGAAGAGGCAATCGAATACTTGAAATCACTTCAGTTACAACTTCAGCTAATGTGGATGGGATCTGGCATGGCACCAATGATGTTTCCAGGAATTCAACACTATATGTCTCAAATGGGTATGGGAATGGCTGCACCTCCTTTCCCTCCAATTCACAATCCGATGCAATTACCGCGAGTGCCGCTTGATAACCATGTACCTGTATCTCAGACACCAAACCAGACATTGATGTGTCAAAATCCTCTTTTGGGTGCCTTCAATTACCAAAATCAGATGCAAAATCCAGCTCTTTCAGAGCAATATGCACGTTACATGGGCTATCATTTTATGCAAAATGCTTCTCAGCTTCCCATTGTTTACCTATTGAAATTAATTTGCCTAGTTCTTTACTTTTTTGTCTTGAAGCCAATGAACGTATTCAGATATGGTCCCCAGGCAGTACAACATAGTCAAACAATGATTACACCCAGCAACAGCAGTGGAAACATGAGTGGAGCAGCAAATATTGATGAGGCTGTGAGTGGCAAAATGGGTAAGCCACTTGCATACTTCTTGCTTTGGCTAACTTCAAAATGA 1737 0.4249 MNNSVPDWSFGSDSCVTSNQKKPMGVDQELVELLWQNGQVVLNSQTHRKPVMNSMVPRPLQRNFQSTLRTNEPFGNSSNLIHDDETVSWIQYPLEDPLEQEFCSNLLTELPQCDVESYRQIKSFEEGKFTKLDASSTPHVTVSSQSPNMKSSSFQEFSGIPIPAPRFHVSDSPQKNNNGLGGPCKVQNFSHFSPTPNVSPALPDAHFRDKITGNMSKNEVRECSLMTVGSSYCGSNHMTQDPDASRASSNGAWTTTLSVEPEAVRDDMPRTIPQSEKGKPDMIEPTATSSSGGSGSSLGKTCSLSTRNQSQKRKTIDVEESEDHSEDTGLKSAVGSKASQRTGAARRNRAAEVHNLSERRRRDRINEKMKALQQLIPHSSKTDKASMLEEAIEYLKSLQLQLQLMWMGSGMAPMMFPGIQHYMSQMGMGMAAPPFPPIHNPMQLPRVPLDNHVPVSQTPNQTLMCQNPLLGAFNYQNQMQNPALSEQYARYMGYHFMQNASQLPIVYLLKLICLVLYFFVLKPMNVFRYGPQAVQHSQTMITPSNSSGNMSGAANIDEAVSGKMGKPLAYFLLWLTSK 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g02461 578 SMART finulus 355 404 IPR011598 GO:0046983
Spst6g02461 578 FunFam Basic helix-loop-helix transcription factor 344 407 - -
Spst6g02461 578 MobiDBLite consensus disorder prediction 256 362 - -
Spst6g02461 578 Coils Coil 355 375 - -
Spst6g02461 578 CDD bHLH_AtPIF_like 349 412 IPR047265 -
Spst6g02461 578 PANTHER TRANSCRIPTION FACTOR PIF3 17 485 IPR044273 GO:0003700|GO:0006355
Spst6g02461 578 Gene3D - 345 405 IPR036638 GO:0046983
Spst6g02461 578 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 349 398 IPR011598 GO:0046983
Spst6g02461 578 MobiDBLite consensus disorder prediction 312 330 - -
Spst6g02461 578 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 352 427 IPR036638 GO:0046983
Spst6g02461 578 MobiDBLite consensus disorder prediction 347 362 - -
Spst6g02461 578 Pfam Helix-loop-helix DNA-binding domain 353 399 IPR011598 GO:0046983
Spst6g02461 578 MobiDBLite consensus disorder prediction 284 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g02461 Spst-Chr6 56330272 56332781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g02461 1 99 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G59060 37.963 3.38e-11 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst6g02461 HLH 1.8e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g02461 K16189 - gmx:100784531 912.524
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g02461 6 56330272 56332781 Spst6g02461 6 56330272 56332781 ECH
Spst6g02461 6 56330272 56332781 Spst8g00763 8 7008481 7014875 PCT