Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g02424 ATGGCAATCTCCCTCTCCCAAATCTCCATCTCTACCGACTCAGATTCTGCATCCTCTTGGGACCACCACCCTAGCTCCTCCCCCCATTACCGCCATCCATCACTGCCACCACTTCCCACAAACCAACTCTGGCAGAATCTCCCTCTTGCCACCCCACCCTCCAAGAAGCCACGTGGTAGGCCCCCAGGCTCAAAGAACAAGCCCAAGTACACCATGGCTCAGCCCTCCATGAAGATTGTCATCGTTAACGTGGCTCCAGGACGTGACATCATGGAGACAATTCTCGACATCGCTCAGCAAAACCATGTCAGCCTCACCATTCTCAGTGCCTCCGGTACCATCGCCTCTGTGATCCTCCGCAATACCCCCACTGGTTCCCCCTCTCTCATGCTTCATGGCCCCTTCAACTTGCTCTCCCTCACCGGCTCCTTCTTATACAACAACGAATACACCCTTCTCCCCGGAGCCACCACTCCCCGTTCCTTGTCCTTCGGGATCCACCTCTCCACCTCTCATGGCCGAATCTTCGGTGGCCCCATTGGCGGTAGAGTCGTTGCCGGTGACGATGTCAGCTTGACCATCTCTACCTACAAGAACCCTGAAATTTACAAATATGTACCCACAGGCCAAGAAAGTAACGAGGACGATAACATCAACAACCACATCAACAAAACTTATAACAGTAACCCTAGTAACTCCAATACGGGTGGCGACTTGTCAATATTCAACTCTGCTAGTTTCGGAATCCGGCAGGCAGTGGCACTCAGAGTAACAGCAGATCGTTGTACTTTCTATAATTGCAGTACTCGCACTCTTGGAACATTGTCACATCCATTGCAAGTCCGCGAGGTTTATAACTGCACAGAGCGAAACTCTCCACAGGAAAAACTGGTTATGTATTCCTCGAGATGTGTTGTCACAGGTAATGGGGGAACTTCATATGCATATCTGGGAAGACCATGGAGACCTTTTGCAAGAGTGGTTTTTGCATTCACTTTCATGGATCAATGTATAAAGCCTGCAGGGTGGAATAATTGGGGCAAATAA 1047 0.5033 MAISLSQISISTDSDSASSWDHHPSSSPHYRHPSLPPLPTNQLWQNLPLATPPSKKPRGRPPGSKNKPKYTMAQPSMKIVIVNVAPGRDIMETILDIAQQNHVSLTILSASGTIASVILRNTPTGSPSLMLHGPFNLLSLTGSFLYNNEYTLLPGATTPRSLSFGIHLSTSHGRIFGGPIGGRVVAGDDVSLTISTYKNPEIYKYVPTGQESNEDDNINNHINKTYNSNPSNSNTGGDLSIFNSASFGIRQAVALRVTADRCTFYNCSTRTLGTLSHPLQVREVYNCTERNSPQEKLVMYSSRCVVTGNGGTSYAYLGRPWRPFARVVFAFTFMDQCIKPAGWNNWGK 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g02424 348 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 29 226 IPR014476 GO:0003680
Spst6g02424 348 Gene3D - 276 348 IPR012334 -
Spst6g02424 348 FunFam AT-hook motif nuclear-localized protein 17 76 213 - -
Spst6g02424 348 ProSiteProfiles PPC domain profile profile. 74 218 IPR005175 -
Spst6g02424 348 SUPERFAMILY Pectin lyase-like 230 347 IPR011050 -
Spst6g02424 348 CDD DUF296 81 187 IPR005175 -
Spst6g02424 348 Pfam Plants and Prokaryotes Conserved (PCC) domain 79 197 IPR005175 -
Spst6g02424 348 MobiDBLite consensus disorder prediction 1 71 - -
Spst6g02424 348 Gene3D - 76 215 - -
Spst6g02424 348 Pfam Pectinesterase 311 346 IPR000070 GO:0030599|GO:0042545
Spst6g02424 348 SUPERFAMILY AF0104/ALDC/Ptd012-like 75 200 - -
Spst6g02424 348 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g02424 Spst-Chr6 52712319 52725122 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g02424 56 238 AT-hook Motif Nuclear Localized (AHL) Family AT1G14490 30.851 4.83e-20 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g02424 - - pvu:PHAVU_006G013800g 318.546