Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g02421 ATGGCAAAGTCCCTCTCTATTAACTCAGATTCTGAATCCTCTGGGGACTACCCTGCTTCACCACCTCCAGCACTTGATGAAAATCAGGCCTCCATGAAGCTTGTCATTGTCAATGTGGCAGCGGGATGTGACGTCCTCAAGTCCATTCTTGATATTGGTCGTCGAGGCCACACCAGCCTCGCCGTCCAAAGCGCCTCTGGTACCATTGCCAGTGTCACCCTCCGTCACATCCCCCACAGTGTCCCTGCCCTTAGGGTTTATGGCCCATTCAACTTACTTTCCCTTACTGGTTCCTACTTTTACAACAACCAACACACCCTTCACCCAGGAGCCACCCCTCCCCCTTCCTTTTCCTTTGGGATCCACCTCTCCACCTCTGATGGCCATGTCTTCGGTGGTAACATAGATGGTCCAGTCATCGCAAGTAAGAATGTTAGCTTGACCATCTTCACCTTCAAGAACCCTGGAATTGACAAATACGTTCCTGAAGGCGAAGAAAACGATGATCAGAACGATAATAACAAAAACAATAAGAATTGTAATAATAGCAGAGGGGATTTGTCGATGTTGAACTCTGCTAGTTGA 585 0.4838 MAKSLSINSDSESSGDYPASPPPALDENQASMKLVIVNVAAGCDVLKSILDIGRRGHTSLAVQSASGTIASVTLRHIPHSVPALRVYGPFNLLSLTGSYFYNNQHTLHPGATPPPSFSFGIHLSTSDGHVFGGNIDGPVIASKNVSLTIFTFKNPGIDKYVPEGEENDDQNDNNKNNKNCNNSRGDLSMLNSAS 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g02421 194 Gene3D - 31 173 - -
Spst6g02421 194 ProSiteProfiles PPC domain profile profile. 29 174 IPR005175 -
Spst6g02421 194 Pfam Plants and Prokaryotes Conserved (PCC) domain 35 153 IPR005175 -
Spst6g02421 194 MobiDBLite consensus disorder prediction 174 194 - -
Spst6g02421 194 MobiDBLite consensus disorder prediction 158 194 - -
Spst6g02421 194 CDD DUF296 36 142 IPR005175 -
Spst6g02421 194 SUPERFAMILY AF0104/ALDC/Ptd012-like 31 161 - -
Spst6g02421 194 MobiDBLite consensus disorder prediction 1 16 - -
Spst6g02421 194 MobiDBLite consensus disorder prediction 159 173 - -
Spst6g02421 194 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 26 183 IPR014476 GO:0003680
Spst6g02421 194 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g02421 Spst-Chr6 52056644 52057228 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g02421 36 152 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 32.479 1.69e-13 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g02421 - - pvu:PHAVU_006G007300g 198.364